Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_027399.1
Length=346602
Score E
Sequences producing significant alignments: (Bits) Value
seq4953 134 3e-26
seq4968 86.0 1e-11
>seq4953
Length=802672
Score = 134 bits (148), Expect = 3e-26
Identities = 260/375 (69%), Gaps = 18/375 (5%)
Strand=Plus/Plus
Query 49170 GGTGCTTTCATGTTTGTTGGACCATCTGGTACTGGTAAAACTGAAATCACAAAAGCACTT 49229
||| | ||| | || |||||| || |||| | |||||| |||||||| | ||| ||||
Sbjct 233202 GGTTCATTCTTATTCGTTGGATCAACTGGAATTGGTAAGACTGAAATGGCTAAACAACTT 233261
Query 49230 GCT---GAAGCAATGGGTTCTGAGC------TAATTCGTTTTGATATGTCAGAGTTTTCG 49280
||| ||| | | || ||||| | || || ||||| |||||||| | | ||
Sbjct 233262 GCTAGAGAATTATTTGGATCTGAAGATTCAATGATCCGATTTGACATGTCAGAATAT-CG 233320
Query 49281 CAAGACCACACTGTATCT-AAACTT-ATTGGTTCACCTCCTGGATATGTAGGACATGAAA 49338
| |||||| | || ||| || ||||||||||| ||||| ||||| ||| | ||
Sbjct 233321 TGA-ACCACAATCAGTCGCAAAGTTGATTGGTTCACCACCTGGCTATGTTGGATACGA-- 233377
Query 49339 CAGGAAATGGTCAGCTTCTTGATAAAGTT-GAACAATTCCCTAATGCAGTACTTCTACTG 49397
| | ||||||| | ||| |||||| | | ||| || || || | || ||
Sbjct 233378 -TGAAGCTGGTCAGTTAACTGAAAAAGTTCGTCGTAATCCTTACAGC-TTAATCTTATTG 233435
Query 49398 GATGAAATTGAAAAAGCACATCCAAAAGTACTGCTGACATTCCTACAAGTATTGGATGAA 49457
|||||| |||||||||| || || | || |||| |||||||| ||| | ||||||||
Sbjct 233436 GATGAAGTTGAAAAAGCTCACCCTGATGTTCTGCACACATTCCTTCAAATCTTGGATGAT 233495
Query 49458 GGGCGTTTGACTGGTTCACAAGGAAAAACAGTTTACTTTAATAATATTACTGTTATTATG 49517
|| ||||| |||| ||||||||| ||| |||| ||| || ||| | |||| |||
Sbjct 233496 GGTCGTTTAACTGATTCACAAGGTCGAACCGTTTCCTTCAAGGATACTGTCATTATCATG 233555
Query 49518 ACTACAAACCTTGGA 49532
|||| ||| ||||
Sbjct 233556 ACTAGTAACGCTGGA 233570
Score = 87.8 bits (96), Expect = 4e-12
Identities = 164/236 (69%), Gaps = 5/236 (2%)
Strand=Plus/Minus
Query 48473 TGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTA-TTATTAAAGAAC 48531
||||||||| || || ||||| |||| ||||| ||| || ||| | || | |||||
Sbjct 303990 TGCTGGTACTAAGTATCGTGGCCAATTTGAAGACCGTCTG-AAGAAAGTTCTAAAAGAGG 303932
Query 48532 TTAAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTG 48591
|| || | | | |||||||||| | || ||||||||| | |||| | | || |||||||
Sbjct 303931 TTGAAGATAGTGGAAATGTAATTCTATTTATTGATGAATTGCATACTCTAATTGGTGCTG 303872
Query 48592 GTGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTTCACGTG 48651
|||||| | | ||||| | ||| || || ||||||| | ||| | || |
Sbjct 303871 GTGGTA-CTG--AGGGATCAGTTGATGCCTCAAACATTTTGAAACCATCCCTTGCTCGAG 303815
Query 48652 GTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTGAA 48707
|| | ||| || || ||||| || || ||| ||||||| || ||||||||
Sbjct 303814 GTCAAGTTCAAGTAATGGGTGCTACCACACTTGATGAATATCAAAAGTACATTGAA 303759
>seq4968
Length=441983
Score = 86.0 bits (94), Expect = 1e-11
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 178964 CCCTTAGTTCAGTTGGATAGAACAACTGCCTTCTAAGCAGTAGGTCACTGGTTCGAGTCC 179023
||||||| ||||||||||||| |||| ||||||||||| || |||| ||||||||| |||
Sbjct 267792 CCCTTAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGCTGGTTCGAATCC 267851
Query 179024 AGTAGGG 179030
|| ||||
Sbjct 267852 AGCAGGG 267858
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1108922151525859
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |