Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq4953 134 3e-26 seq4968 86.0 1e-11 >seq4953 Length=802672 Score = 134 bits (148), Expect = 3e-26 Identities = 260/375 (69%), Gaps = 18/375 (5%) Strand=Plus/Plus Query 49170 GGTGCTTTCATGTTTGTTGGACCATCTGGTACTGGTAAAACTGAAATCACAAAAGCACTT 49229 ||| | ||| | || |||||| || |||| | |||||| |||||||| | ||| |||| Sbjct 233202 GGTTCATTCTTATTCGTTGGATCAACTGGAATTGGTAAGACTGAAATGGCTAAACAACTT 233261 Query 49230 GCT---GAAGCAATGGGTTCTGAGC------TAATTCGTTTTGATATGTCAGAGTTTTCG 49280 ||| ||| | | || ||||| | || || ||||| |||||||| | | || Sbjct 233262 GCTAGAGAATTATTTGGATCTGAAGATTCAATGATCCGATTTGACATGTCAGAATAT-CG 233320 Query 49281 CAAGACCACACTGTATCT-AAACTT-ATTGGTTCACCTCCTGGATATGTAGGACATGAAA 49338 | |||||| | || ||| || ||||||||||| ||||| ||||| ||| | || Sbjct 233321 TGA-ACCACAATCAGTCGCAAAGTTGATTGGTTCACCACCTGGCTATGTTGGATACGA-- 233377 Query 49339 CAGGAAATGGTCAGCTTCTTGATAAAGTT-GAACAATTCCCTAATGCAGTACTTCTACTG 49397 | | ||||||| | ||| |||||| | | ||| || || || | || || Sbjct 233378 -TGAAGCTGGTCAGTTAACTGAAAAAGTTCGTCGTAATCCTTACAGC-TTAATCTTATTG 233435 Query 49398 GATGAAATTGAAAAAGCACATCCAAAAGTACTGCTGACATTCCTACAAGTATTGGATGAA 49457 |||||| |||||||||| || || | || |||| |||||||| ||| | |||||||| Sbjct 233436 GATGAAGTTGAAAAAGCTCACCCTGATGTTCTGCACACATTCCTTCAAATCTTGGATGAT 233495 Query 49458 GGGCGTTTGACTGGTTCACAAGGAAAAACAGTTTACTTTAATAATATTACTGTTATTATG 49517 || ||||| |||| ||||||||| ||| |||| ||| || ||| | |||| ||| Sbjct 233496 GGTCGTTTAACTGATTCACAAGGTCGAACCGTTTCCTTCAAGGATACTGTCATTATCATG 233555 Query 49518 ACTACAAACCTTGGA 49532 |||| ||| |||| Sbjct 233556 ACTAGTAACGCTGGA 233570 Score = 87.8 bits (96), Expect = 4e-12 Identities = 164/236 (69%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 48473 TGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTA-TTATTAAAGAAC 48531 ||||||||| || || ||||| |||| ||||| ||| || ||| | || | ||||| Sbjct 303990 TGCTGGTACTAAGTATCGTGGCCAATTTGAAGACCGTCTG-AAGAAAGTTCTAAAAGAGG 303932 Query 48532 TTAAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTG 48591 || || | | | |||||||||| | || ||||||||| | |||| | | || ||||||| Sbjct 303931 TTGAAGATAGTGGAAATGTAATTCTATTTATTGATGAATTGCATACTCTAATTGGTGCTG 303872 Query 48592 GTGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTTCACGTG 48651 |||||| | | ||||| | ||| || || ||||||| | ||| | || | Sbjct 303871 GTGGTA-CTG--AGGGATCAGTTGATGCCTCAAACATTTTGAAACCATCCCTTGCTCGAG 303815 Query 48652 GTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTGAA 48707 || | ||| || || ||||| || || ||| ||||||| || |||||||| Sbjct 303814 GTCAAGTTCAAGTAATGGGTGCTACCACACTTGATGAATATCAAAAGTACATTGAA 303759 >seq4968 Length=441983 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 178964 CCCTTAGTTCAGTTGGATAGAACAACTGCCTTCTAAGCAGTAGGTCACTGGTTCGAGTCC 179023 ||||||| ||||||||||||| |||| ||||||||||| || |||| ||||||||| ||| Sbjct 267792 CCCTTAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGCTGGTTCGAATCC 267851 Query 179024 AGTAGGG 179030 || |||| Sbjct 267852 AGCAGGG 267858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108922151525859