Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq4903 150 1e-31
seq4678 123 2e-23
seq4548 118 8e-22
seq4761 107 2e-18
seq5094 96.9 3e-15
>seq4903
Length=2073822
Score = 150 bits (166), Expect = 1e-31
Identities = 347/517 (67%), Gaps = 8/517 (2%)
Strand=Plus/Minus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
|| |||||||| |||||||| | ||||| | |||||||| ||| |||| || | ||||
Sbjct 615512 CCAAAAATTGTGAATGGTCCCCAGATCTTGGACAAATATGTGGGTGAATCAGAGGCAAAT 615453
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548
|| || || | ||||| || || || || || | || ||| | |||| || |||
Sbjct 615452 GTTCGCCGGCTTTTTGCCGAGGCCGAGGAGGAGGAGAAGCGTCTGGGGCCAAACAGTGGC 615393
Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT--TCTGGT- 19605
||||||| || || | || ||| | || || || || ||||| | || | |||
Sbjct 615392 CTGCACATCATCATCTTTGACGAAATCGATGCGATTTGCAAGCAGCGTGGCAGTGTGGCC 615333
Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662
| ||| || || || ||||| || |||||||| || ||| | ||| | || || |||
Sbjct 615332 GGGAATAGCGGTGTCCACGACACCGTCGTCAATCAGCTGCTGACCAAAATCGATGGCGTT 615273
Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722
| || ||||| ||||| | || ||||||||||| ||| | | || | || ||
Sbjct 615272 GATCAGCTGAACAATATCCTGGTCATTGGCATGACCAATCGTCGAGATATGATTGATGAG 615213
Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782
|| | ||||||| ||||| | ||| | | || || || | | || ||||
Sbjct 615212 GCGCTCCTACGACCAGGTCGCCTTGAAGTCCAAATGGAGATCAGTCTGCCGAATGAGCAG 615153
Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAAT 19842
||||| || | || |||| || ||||| | ||||| | ||| | |||
Sbjct 615152 GGACGCGTCCAGATCCTAAATATCCATACGAAACGGATGCGGGACTTTAATAAGATCAAT 615093
Query 19843 GACGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACT 19901
|||||||| || | | || || ||||| || ||||| |||| ||| ||||| |||||
Sbjct 615092 GACGATGTGGA-CAACAAGGAGATTGCTGCTCTCACCAAGAACTTTAGTGGCGCCGAACT 615034
Query 19902 TGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938
||||| ||||| | |||||||| || | ||| |||
Sbjct 615033 AGAGGGTCTAGTGCGTGCCGCCCAGTCCAGTGCCATG 614997
>seq4678
Length=1229792
Score = 123 bits (136), Expect = 2e-23
Identities = 286/428 (67%), Gaps = 5/428 (1%)
Strand=Plus/Minus
Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913
|||| || ||||| || ||| || || ||||| || ||| |||| || ||| |
Sbjct 1146837 TGGCCTTCTTTGCCGCCTCCGATGGTATTGTCAACGAGAATCTGGTGGAGCGCTTTAGCC 1146778
Query 43914 AAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972
| || || || || ||| || || || || |||||||| || || || ||||| || ||
Sbjct 1146777 AGGAGGTACAGATCACC-GAGGCCCGCTGCTTTTATGGCTTCCAGATCGCCATGGAGAAC 1146719
Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAG 44032
| |||||||| ||||||||| | ||||| || || ||||| || ||| || |
Sbjct 1146718 GTGCATTCGGAGATGTACAGTGTGCTGATCGACACTTACATTCGGGACCCACACCAGCGG 1146659
Query 44033 CATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCC 44092
| |||| ||||| || || || | || ||| | || | || || |||||||||
Sbjct 1146658 GAATATCTGTTCAATGCCATTGAGACCATGCCGGCGGTGAAGCGCAAGGCTGACTGGGCC 1146599
Query 44093 CTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTTGTCGCGTTTGCAGTT 44149
|| ||||| ||| || | ||||| || || | | |||||||| |
Sbjct 1146598 CTGTCCTGGATCTCTTCCAAGTCGGCCAACTTTGGGGAGCGCATCATTGCGTTTGCCGCC 1146539
Query 44150 GTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209
|| || ||||||||||| || ||||| |||| || ||| | ||||| || ||
Sbjct 1146538 GTCGAGGGCATTTTCTTCAGCGGCAGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGCGGC 1146479
Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGC 44269
|||||||||| ||||| || || |||||| | || || ||||| || | || ||
Sbjct 1146478 CTGATGCCTGGTTTGACCTTCTCCAATGAGCTGATCTCCCGCGATGAGGGTCTGCACTGT 1146419
Query 44270 GATTTTGC 44277
|| |||||
Sbjct 1146418 GACTTTGC 1146411
>seq4548
Length=380078
Score = 118 bits (130), Expect = 8e-22
Identities = 337/509 (66%), Gaps = 13/509 (3%)
Strand=Plus/Plus
Query 19430 CCAAA-ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
||||| ||||| || ||||| | ||| | | |||||||| || | ||||| | ||||
Sbjct 148129 CCAAAGATTGTTAACGGTCCGCAGATCCTGGACAAATATGTCGGCGAGTCGGAGGCAAAT 148188
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548
| ||||| || || || || || || || || | || || || || | ||| |||
Sbjct 148189 ATCCGACGCTTATTCGCGGAAGCCGAGGAGGAGGAGAAGCGCTTGGGACCCAACAGTGGC 148248
Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGG-T 19605
||||||| || || | || ||| | || || || || ||| | || || ||| |
Sbjct 148249 CTGCACATCATCATTTTCGACGAAATCGATGCTATTTGCAAGGCTCGTGGCTCAGTGGCT 148308
Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662
| ||| || || ||||| || || ||||| ||||| ||| | || | || |||||
Sbjct 148309 GGAAACAGCGGTGTCCATGATACGGTGGTCAACCAACTGCTGGCCAAGATCGATGGTGTG 148368
Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722
| || | || ||||||||||| || || ||||| || || | ||| | || ||
Sbjct 148369 GAGCAGTTAAACAATATTTTAGTGATAGGTATGACCAACAGGCGGGACATGATCGATGAG 148428
Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782
|| | | |||||||| || |||||| | | || || |||| | | || ||||
Sbjct 148429 GCACTGCTGCGACCCGGACGCTTGGAAGTCCAAATGGAGATTAGCCTGCCAAATGAGCAA 148488
Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACAAAATAACCTTTTAA 19840
||||| || | || | ||||| | ||| ||| | |||||| | |||| |
Sbjct 148489 GGACGCGTCCAGATCCTCAACATTC--ACACCAAGCGGATGCGAGACTTTAACAAGATCG 148546
Query 19841 ATGACGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAA 19899
|||||| || | | || |||||||| || || || |||| |||||| |||||
Sbjct 148547 CCAGCGATGTGGA-CAACAATGAAATTGCCGCCAGGACAAAGAACTTTAGCGGTGCAGAG 148605
Query 19900 CTTGAGGGATTAGTGAGGGCCGCCCAATC 19928
|| || ||||| || || || || |||||
Sbjct 148606 CTGGAAGGATTGGTCAGAGCAGCTCAATC 148634
>seq4761
Length=1439414
Score = 107 bits (118), Expect = 2e-18
Identities = 215/319 (67%), Gaps = 0/319 (0%)
Strand=Plus/Minus
Query 41096 TGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTT 41155
||| || |||| ||||| |||| || || | ||||||||| || || || || ||
Sbjct 1350406 TGGCGAGTTGTCCTGTCAGCTGTACCAGAGGAGCGCTGACATGGGTCTGGGCGTGCCATT 1350347
Query 41156 TAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACC 41215
||||| || ||| || ||||| || | ||||| || || || || | | || ||
Sbjct 1350346 CAACATCGCCTCTTACGCCCTGCTTACCCACATGATAGCCCATGTGACAGGTCTGAAGCC 1350287
Query 41216 TGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTT 41275
|||||| |||||||| || | || || | ||| | ||| | ||||| | || ||| |
Sbjct 1350286 TGGTGACTTTGTTCATACCATGGGCGACGCTCATGTCTACCTAAATCATGTGGATCCGCT 1350227
Query 41276 AACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGT 41335
| || || ||| || | || | || ||||| | ||| | || || ||| ||
Sbjct 1350226 GAAGGAGCAGCTGCAGCGCACTCCGCGTCCGTTTCCCAAGCTGGTGATCAAGCGCAAGGT 1350167
Query 41336 TGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCC 41395
| ||||||| || ||| | | || || |||| | |||||||||||| |||||
Sbjct 1350166 GCAGGACATTGAGGACTTTCGGTTTGAGGACTTTGAGATAGTCGATTACAATCCCTACCC 1350107
Query 41396 TAAAATCCACATGGACATG 41414
|||||||| ||||| |||
Sbjct 1350106 AAAAATCCAGATGGAAATG 1350088
>seq5094
Length=366253
Score = 96.9 bits (106), Expect = 3e-15
Identities = 166/241 (69%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108
|||||| | || || |||||| | | | ||| ||||||||| | | || |||||
Sbjct 188445 ATGGCACTCCCTCCGTGTCATGTAATGTTTCAATTTTACGTTAACGACGGAAAACTGAGT 188504
Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168
|| || |||||||| | || ||||| || || || ||||||||||| || |||
Sbjct 188505 TGCCAGTTGTATCAGCGGAGTGGCGACATTTTCCTTGGAGTTCCGTTTAACATCGCTAGT 188564
Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTT 41228
|||||||| | || | | |||||| | | | | | || ||||| ||||||
Sbjct 188565 TATGCTCTTTTGACTAACTTAATTGCAAAAGAGGTAGGTCTTGAGCCCGGTGATTTTGTT 188624
Query 41229 CACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTG 41288
|| || ||||||||| || ||||||| |||||| || || | | ||| |||||| ||
Sbjct 188625 CATACTCTAGGAGATGCTCACATTTACAGTAATCATATTGAACAGGTAAAGGAACAATTG 188684
Query 41289 A 41289
|
Sbjct 188685 A 188685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397431097021705
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |