Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4903 150 1e-31 seq4678 123 2e-23 seq4548 118 8e-22 seq4761 107 2e-18 seq5094 96.9 3e-15 >seq4903 Length=2073822 Score = 150 bits (166), Expect = 1e-31 Identities = 347/517 (67%), Gaps = 8/517 (2%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || |||||||| |||||||| | ||||| | |||||||| ||| |||| || | |||| Sbjct 615512 CCAAAAATTGTGAATGGTCCCCAGATCTTGGACAAATATGTGGGTGAATCAGAGGCAAAT 615453 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 || || || | ||||| || || || || || | || ||| | |||| || ||| Sbjct 615452 GTTCGCCGGCTTTTTGCCGAGGCCGAGGAGGAGGAGAAGCGTCTGGGGCCAAACAGTGGC 615393 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT--TCTGGT- 19605 ||||||| || || | || ||| | || || || || ||||| | || | ||| Sbjct 615392 CTGCACATCATCATCTTTGACGAAATCGATGCGATTTGCAAGCAGCGTGGCAGTGTGGCC 615333 Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | ||| || || || ||||| || |||||||| || ||| | ||| | || || ||| Sbjct 615332 GGGAATAGCGGTGTCCACGACACCGTCGTCAATCAGCTGCTGACCAAAATCGATGGCGTT 615273 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || ||||| ||||| | || ||||||||||| ||| | | || | || || Sbjct 615272 GATCAGCTGAACAATATCCTGGTCATTGGCATGACCAATCGTCGAGATATGATTGATGAG 615213 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || | ||||||| ||||| | ||| | | || || || | | || |||| Sbjct 615212 GCGCTCCTACGACCAGGTCGCCTTGAAGTCCAAATGGAGATCAGTCTGCCGAATGAGCAG 615153 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAAT 19842 ||||| || | || |||| || ||||| | ||||| | ||| | ||| Sbjct 615152 GGACGCGTCCAGATCCTAAATATCCATACGAAACGGATGCGGGACTTTAATAAGATCAAT 615093 Query 19843 GACGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACT 19901 |||||||| || | | || || ||||| || ||||| |||| ||| ||||| ||||| Sbjct 615092 GACGATGTGGA-CAACAAGGAGATTGCTGCTCTCACCAAGAACTTTAGTGGCGCCGAACT 615034 Query 19902 TGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 ||||| ||||| | |||||||| || | ||| ||| Sbjct 615033 AGAGGGTCTAGTGCGTGCCGCCCAGTCCAGTGCCATG 614997 >seq4678 Length=1229792 Score = 123 bits (136), Expect = 2e-23 Identities = 286/428 (67%), Gaps = 5/428 (1%) Strand=Plus/Minus Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 |||| || ||||| || ||| || || ||||| || ||| |||| || ||| | Sbjct 1146837 TGGCCTTCTTTGCCGCCTCCGATGGTATTGTCAACGAGAATCTGGTGGAGCGCTTTAGCC 1146778 Query 43914 AAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 | || || || || ||| || || || || |||||||| || || || ||||| || || Sbjct 1146777 AGGAGGTACAGATCACC-GAGGCCCGCTGCTTTTATGGCTTCCAGATCGCCATGGAGAAC 1146719 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAG 44032 | |||||||| ||||||||| | ||||| || || ||||| || ||| || | Sbjct 1146718 GTGCATTCGGAGATGTACAGTGTGCTGATCGACACTTACATTCGGGACCCACACCAGCGG 1146659 Query 44033 CATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCC 44092 | |||| ||||| || || || | || ||| | || | || || ||||||||| Sbjct 1146658 GAATATCTGTTCAATGCCATTGAGACCATGCCGGCGGTGAAGCGCAAGGCTGACTGGGCC 1146599 Query 44093 CTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTTGTCGCGTTTGCAGTT 44149 || ||||| ||| || | ||||| || || | | |||||||| | Sbjct 1146598 CTGTCCTGGATCTCTTCCAAGTCGGCCAACTTTGGGGAGCGCATCATTGCGTTTGCCGCC 1146539 Query 44150 GTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209 || || ||||||||||| || ||||| |||| || ||| | ||||| || || Sbjct 1146538 GTCGAGGGCATTTTCTTCAGCGGCAGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGCGGC 1146479 Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGC 44269 |||||||||| ||||| || || |||||| | || || ||||| || | || || Sbjct 1146478 CTGATGCCTGGTTTGACCTTCTCCAATGAGCTGATCTCCCGCGATGAGGGTCTGCACTGT 1146419 Query 44270 GATTTTGC 44277 || ||||| Sbjct 1146418 GACTTTGC 1146411 >seq4548 Length=380078 Score = 118 bits (130), Expect = 8e-22 Identities = 337/509 (66%), Gaps = 13/509 (3%) Strand=Plus/Plus Query 19430 CCAAA-ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||||| || ||||| | ||| | | |||||||| || | ||||| | |||| Sbjct 148129 CCAAAGATTGTTAACGGTCCGCAGATCCTGGACAAATATGTCGGCGAGTCGGAGGCAAAT 148188 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | ||||| || || || || || || || || | || || || || | ||| ||| Sbjct 148189 ATCCGACGCTTATTCGCGGAAGCCGAGGAGGAGGAGAAGCGCTTGGGACCCAACAGTGGC 148248 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGG-T 19605 ||||||| || || | || ||| | || || || || ||| | || || ||| | Sbjct 148249 CTGCACATCATCATTTTCGACGAAATCGATGCTATTTGCAAGGCTCGTGGCTCAGTGGCT 148308 Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | ||| || || ||||| || || ||||| ||||| ||| | || | || ||||| Sbjct 148309 GGAAACAGCGGTGTCCATGATACGGTGGTCAACCAACTGCTGGCCAAGATCGATGGTGTG 148368 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || | || ||||||||||| || || ||||| || || | ||| | || || Sbjct 148369 GAGCAGTTAAACAATATTTTAGTGATAGGTATGACCAACAGGCGGGACATGATCGATGAG 148428 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || | | |||||||| || |||||| | | || || |||| | | || |||| Sbjct 148429 GCACTGCTGCGACCCGGACGCTTGGAAGTCCAAATGGAGATTAGCCTGCCAAATGAGCAA 148488 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACAAAATAACCTTTTAA 19840 ||||| || | || | ||||| | ||| ||| | |||||| | |||| | Sbjct 148489 GGACGCGTCCAGATCCTCAACATTC--ACACCAAGCGGATGCGAGACTTTAACAAGATCG 148546 Query 19841 ATGACGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAA 19899 |||||| || | | || |||||||| || || || |||| |||||| ||||| Sbjct 148547 CCAGCGATGTGGA-CAACAATGAAATTGCCGCCAGGACAAAGAACTTTAGCGGTGCAGAG 148605 Query 19900 CTTGAGGGATTAGTGAGGGCCGCCCAATC 19928 || || ||||| || || || || ||||| Sbjct 148606 CTGGAAGGATTGGTCAGAGCAGCTCAATC 148634 >seq4761 Length=1439414 Score = 107 bits (118), Expect = 2e-18 Identities = 215/319 (67%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 41096 TGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTT 41155 ||| || |||| ||||| |||| || || | ||||||||| || || || || || Sbjct 1350406 TGGCGAGTTGTCCTGTCAGCTGTACCAGAGGAGCGCTGACATGGGTCTGGGCGTGCCATT 1350347 Query 41156 TAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACC 41215 ||||| || ||| || ||||| || | ||||| || || || || | | || || Sbjct 1350346 CAACATCGCCTCTTACGCCCTGCTTACCCACATGATAGCCCATGTGACAGGTCTGAAGCC 1350287 Query 41216 TGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTT 41275 |||||| |||||||| || | || || | ||| | ||| | ||||| | || ||| | Sbjct 1350286 TGGTGACTTTGTTCATACCATGGGCGACGCTCATGTCTACCTAAATCATGTGGATCCGCT 1350227 Query 41276 AACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGT 41335 | || || ||| || | || | || ||||| | ||| | || || ||| || Sbjct 1350226 GAAGGAGCAGCTGCAGCGCACTCCGCGTCCGTTTCCCAAGCTGGTGATCAAGCGCAAGGT 1350167 Query 41336 TGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCC 41395 | ||||||| || ||| | | || || |||| | |||||||||||| ||||| Sbjct 1350166 GCAGGACATTGAGGACTTTCGGTTTGAGGACTTTGAGATAGTCGATTACAATCCCTACCC 1350107 Query 41396 TAAAATCCACATGGACATG 41414 |||||||| ||||| ||| Sbjct 1350106 AAAAATCCAGATGGAAATG 1350088 >seq5094 Length=366253 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 |||||| | || || |||||| | | | ||| ||||||||| | | || ||||| Sbjct 188445 ATGGCACTCCCTCCGTGTCATGTAATGTTTCAATTTTACGTTAACGACGGAAAACTGAGT 188504 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 || || |||||||| | || ||||| || || || ||||||||||| || ||| Sbjct 188505 TGCCAGTTGTATCAGCGGAGTGGCGACATTTTCCTTGGAGTTCCGTTTAACATCGCTAGT 188564 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTT 41228 |||||||| | || | | |||||| | | | | | || ||||| |||||| Sbjct 188565 TATGCTCTTTTGACTAACTTAATTGCAAAAGAGGTAGGTCTTGAGCCCGGTGATTTTGTT 188624 Query 41229 CACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTG 41288 || || ||||||||| || ||||||| |||||| || || | | ||| |||||| || Sbjct 188625 CATACTCTAGGAGATGCTCACATTTACAGTAATCATATTGAACAGGTAAAGGAACAATTG 188684 Query 41289 A 41289 | Sbjct 188685 A 188685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397431097021705