Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4765 212 5e-50 seq4644 109 5e-19 seq4810 107 2e-18 >seq4765 Length=3541379 Score = 212 bits (234), Expect = 5e-50 Identities = 993/1560 (64%), Gaps = 35/1560 (2%) Strand=Plus/Minus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || ||||||||||| || |||||||||| |||||||| ||||| | |||||||| || Sbjct 3010800 TTGTCGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCCG 3010741 Query 130466 GTTTTGAGTCCAATTTTGTGTCCA----TAATTGTGGATGCTGCACATTGTTTGG--TAA 130519 ||||| || ||| || ||| ||| ||| ||| || | ||| || Sbjct 3010740 GTTTTAAGGCCAGCCTT----CCACGAGTAAAAGTGTATGGATGTCA--GCTTGCCATAG 3010687 Query 130520 TTGGGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCT 130579 ||||| | ||||| ||||||| |||||| ||||| ||||| || || | ||| Sbjct 3010686 TTGGGCTCAGCCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCT 3010627 Query 130580 GCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTA 130639 || ||||| | | ||| ||| ||||||||| | |||||||| ||||| | | Sbjct 3010626 GCGGCCATTTTAATGGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACAGATCGCGA 3010567 Query 130640 ATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTG 130699 | | | ||| ||| | | || || | || | ||| || || | ||| Sbjct 3010566 ACATTCTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTTC 3010507 Query 130700 CGCATACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATG 130759 ||| | ||| |||| | |||| ||||| | | |||| || | Sbjct 3010506 TTCATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACC 3010447 Query 130760 ATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAG 130819 | || || || || | || ||||| | || || || | ||| |||| || ||| Sbjct 3010446 ACCTGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAG 3010387 Query 130820 GATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGA 130879 |||||||||||||| | ||| || || || | ||| ||||||||| ||||| | ||| Sbjct 3010386 GATTCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGA 3010327 Query 130880 GAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAG 130939 || || | || ||||| || |||| | ||||| | |||| ||||| || Sbjct 3010326 GAGTTTCTAACGCCGTGTTTCTTGATCGATTCCTTCAGCTTTGCCCAGTCCCAGAGGTTC 3010267 Query 130940 GTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGAT 130999 || ||| || |||| |||||| || | || || || || || || |||| ||| Sbjct 3010266 GTGGGT---ACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCC 3010210 Query 131000 TCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCG 131059 ||| | | ||| || |||||||| | ||||| || || ||||||| ||||| Sbjct 3010209 TCGTAGGTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCA 3010150 Query 131060 TAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGA 131119 ||||| || ||||| || |||| ||| | | ||| | | ||| ||||| || Sbjct 3010149 TAATATATCGTTTCAAAGATCTGTTGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGGG 3010090 Query 131120 AATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGT 131179 ||| |||| | ||| || || || ||||| ||||| | |||| ||| | || | ||| Sbjct 3010089 AATCTCATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGC 3010030 Query 131180 TTTAAATTACATTTACGCGAACATTCGG--TGGGATAAAGGTTAATGTCAATTATTTTGT 131237 | | ||| |||| | | | | ||| ||||||| ||| |||||||| || |||| Sbjct 3010029 CTCATATTCGATTTCCTGG--CCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGT 3009972 Query 131238 TTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAG 131297 | | ||| | ||| | | ||||| |||| || | ||||| |||| Sbjct 3009971 TCAGATTCTTGGCCACAGTCTTGGTGACCTCCTTCAGCTTCTTAAAATCGTACGT---CT 3009915 Query 131298 TTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGT 131357 ||||| | | ||||| || | | || |||||||| || || || || | |||| Sbjct 3009914 TTTCGGGCGTCACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGT 3009855 Query 131358 CATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAAT 131417 | | | |||| || ||||| | ||||| ||| |||| ||| |||||||||| || Sbjct 3009854 CGGGCGAGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACAT 3009795 Query 131418 TTTGTTGATTGCTTTTAGCATT-CACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTT 131476 | || |||||||| || || ||| |||||| | | |||||| || |||| || Sbjct 3009794 TCTGCTGATTGCTCTTCCTGTTGCAC-GCATCCTTGAAGAGCATGTACGGATTGCCAGTC 3009736 Query 131477 TCGACTTGAGTTTCAATAATGTATCGAA--AGAGTTTTCGAGCAGACAAT-TGATATTTG 131533 || || || | || || ||| |||| | || |||| | | | ||| | Sbjct 3009735 TCCACCTGCGCCTCGATGATG--GCGAACCACAGGGACTGAGCCTTAACTGTCCGATTGG 3009678 Query 131534 TATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTG 131593 || || || ||||| || ||||| | | ||||| | | ||| || | Sbjct 3009677 CCTTTCCCTCG-GCCTCGTATTTAAGGTACAGCTTCTCAAACTCGTCGCCCCACACATCC 3009619 Query 131594 TCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGC 131653 | || |||||| | | || |||||||| ||||| | ||| || || ||| Sbjct 3009618 TGCAGGCCGGGACACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGCGC 3009559 Query 131654 TTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCT 131713 |||||||| | ||| || | ||| | || || || ||||| | ||| ||||| || Sbjct 3009558 TTCATAAAGAGATCGGGTATCCAGAGGGCATAGAATAGATCGCGAGCACGATTCTCCTCC 3009499 Query 131714 GTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAA 131773 | || | | ||||||| | || || || || | |||| |||||||| |||||| Sbjct 3009498 TTGCCGGTGTTCTTTTTCAGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCCAAA 3009439 Query 131774 TACACTGCCATTGCGCCTTTGCGCTTACCG---CCTTGATTAACATGACGAACCATGTTG 131830 || | || | || || ||||| ||| || || | || | ||| ||| ||| Sbjct 3009438 TAGATGGCAAAGGCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACATTG 3009379 Query 131831 TTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAG 131890 ||| | || |||| |||||| | | || |||| | | ||||| |||| ||| | Sbjct 3009378 TTGAAGACTCGCAGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCCACATATGGAA 3009319 Query 131891 CTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACC-TCCGCCGTATTTAGAGAT 131949 |||| ||||| | ||| || || || || ||||| || |||||| | || ||||| Sbjct 3009318 GTGCCCTTGGCACGGATGCAATGGACATTCAGGCCAATGCCGCCCGCCG-ACTTGGAGAT 3009260 >seq4644 Length=1132839 Score = 109 bits (120), Expect = 5e-19 Identities = 164/229 (72%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||||| || | ||||| || | || || || || || || |||||||| Sbjct 752078 CCTCCGCGCAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAG 752019 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| || |||||| ||||||||||||| ||||| || || Sbjct 752018 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCTGGAGGG 751959 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| || || ||||||| |||| | || | ||||| | |||| || || Sbjct 751958 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGC-TCCAC 751900 Query 27200 TTCTAGAGTTATAG-ATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| ||||| || | ||| | || ||||| ||||||||||| ||||| Sbjct 751899 TTCCAGAGTGATGGTCTTTCCGAGTAAGAGTCTTCACAAAGATCTGCAT 751851 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||||| || | |||||||| | || || || || || || ||||||||| Sbjct 752534 CCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 752475 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| || ||||| || |||||| | || | |||||| ||||| || || Sbjct 752474 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 752415 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| || || ||||||| |||| | || | ||||| | ||||| || | Sbjct 752414 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACC 752355 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | | || || || | || || ||||| || ||||||||||| ||||| Sbjct 752354 TCCAAG-GTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 752308 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||||| || | ||||| || | || || || || || || ||||||||| Sbjct 751849 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 751790 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| || ||||| || |||||| | || | |||||| ||||| || || Sbjct 751789 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 751730 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| |||| | || | ||||| | | |||||| Sbjct 751729 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGTTCAACC 751670 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | || || |||| |||||||||||||| ||||| Sbjct 751669 TCCAAGGTGATGGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 751623 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || | ||||| || | || || || || || || ||||||||| Sbjct 752762 CCTCCGCGGAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAG 752703 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| || ||||| || |||||| | || | |||||| ||||| || || Sbjct 752702 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGT 752643 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| || || ||| ||| |||| | || | ||||| | ||||| || | Sbjct 752642 ATTCCCTCCTTGTCTTGGATTTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCA-C 752584 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| ||||| || | || || ||||| || ||||||||||| ||||| Sbjct 752583 TTCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 752536 >seq4810 Length=1195048 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| |||| |||| ||||| || | || || || || || || ||||| ||| Sbjct 316532 TGCCTCCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGG 316473 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| |||| || ||||| || ||||| | || |||||||| || || || | Sbjct 316472 ACAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGG 316413 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | | || | ||||| | || || | Sbjct 316412 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGA 316353 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || |||| ||||| |||| ||| || || ||||||||||| Sbjct 316352 CCTCAAGGGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 316304 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||||| |||| ||||| || | || || || || || || |||||||| Sbjct 316760 TGCCTCCGCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAG 316701 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | || || ||||| || ||||| | || |||||||| || || || | Sbjct 316700 AGAGAGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGG 316641 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | | || | || || | || || | Sbjct 316640 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGA 316581 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| |||| ||| || || ||||| ||||| Sbjct 316580 CCTCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 316532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424907775336792