Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq4678 104 7e-17 >seq4678 Length=1229792 Score = 104 bits (114), Expect = 7e-17 Identities = 293/440 (67%), Gaps = 25/440 (6%) Strand=Plus/Minus Query 443431 TGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACG 443490 ||||||||||||| | ||| ||||| ||| |||||||||||| ||| || | Sbjct 1146837 TGGCCTTCTTTGCCGCCTCCGATGGTATTGTCAACGAGAATCTGGTGGAGCGCTTTAGCC 1146778 Query 443491 AAATGGTAGTGTACACCGAGGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACA 443550 | |||| | |||||||||||||| ||| || | ||||| ||| ||||||||| Sbjct 1146777 AGGAGGTACAGATCACCGAGGCCCGCTGCTTTTATGGCTTCCAGATCGCCATGGAGAACG 1146718 Query 443551 TTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAA--TTCCGAACGAAGACGAACA 443608 | || | ||| | |||||| | ||||| |||||| | ||| | || | || || Sbjct 1146717 TGCATTCGGAGATGTACAGTGTGCTGATC--GACACTTACATTCGGGACCCACAC---CA 1146663 Query 443609 GCGGTCC-ATCTTCTCATCGTTCAT---GACCACGCCAGGCATCACTGAA----AAGACT 443660 |||| |||| ||| | ||| ||||| ||| | | |||| ||| || Sbjct 1146662 GCGGGAATATCTGTTCAATGC-CATTGAGACCATGCCGG----CGGTGAAGCGCAAGGCT 1146608 Query 443661 CGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCT--CAGCTTCGTCGAGCGACTAGTCG 443718 |||||| ||| || | || || || ||| | ||||| | | | Sbjct 1146607 GACTGGGCCCTGTCCTGGATCT--CTTCCAAGTCGGCCAACTTTGGGGAGCGCATCATTG 1146550 Query 443719 CTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTG 443778 | ||||| | ||||| || | || || |||||||||||| |||||||| |||||| || Sbjct 1146549 CGTTTGCCGCCGTCGAGGGCATTTTCTTCAGCGGCAGCTTT-GCCTCCATTTTCTGGCTG 1146491 Query 443779 AAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAG 443838 || ||||| || || |||| ||| ||||||| || || |||||| || || ||| Sbjct 1146490 AAGAAGCGCGGCCTGATGCCTGGTTTGACCTTCTCCAATGAGCTGATCTCCCGCGATGAG 1146431 Query 443839 GGTTTGCATTGCGACTTCGC 443858 ||| |||| || ||||| || Sbjct 1146430 GGTCTGCACTGTGACTTTGC 1146411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588231377796745