Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4765 185 1e-41 seq4678 154 2e-32 seq4198 122 1e-22 >seq4765 Length=3541379 Score = 185 bits (204), Expect = 1e-41 Identities = 638/989 (65%), Gaps = 17/989 (2%) Strand=Plus/Minus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 ||||| || || ||||| || || ||| |||| || || |||| || || || ||||| Sbjct 3010413 TAGATATTCGTGGTGTACGGCTCGAAGGATTCGTTGTTGCCCATTATCTGGGCAGTGGAT 3010354 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 || || ||||| || |||| | ||| ||| | || || | | |||||| |||| Sbjct 3010353 GCCGTGGGCATGGGGGCCACGAGCAGAGAGTTTCTAACGCCGTGTTTCTTGATCGATTCC 3010294 Query 110828 TTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCTT--CCCACATGTCAAACTGAA 110885 || || ||||||| || | | ||| | ||||| |||||||||| |||| | Sbjct 3010293 TTCAGCTTTGCCCAGTCCCAGAGGTTCGTGGGT--ACCTTGTCCCACATGTCGTACTGGA 3010236 Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945 | | || | | | |||| ||||| |||||||||| | |||| | | | |||| Sbjct 3010235 GGATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCATACGGGCCTTCGACCTGGGCCA 3010176 Query 110946 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 111005 |||||| || || ||||||| | | | ||| || ||||||||||| | ||||| Sbjct 3010175 GTTCACAACTGGCTTCCAGGGCTCCATAATATATCGTTTCAAAGATCTGTTGATTCAGGA 3010116 Query 111006 CCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTT 111065 || || || || | | | | | || ||| || |||| ||||| || | Sbjct 3010115 GACCCGCCTCCTCGCTTTCGTAGGGGAATCTCATCAGAATCAAGGCATCGGCGAGTCCCT 3010056 Query 111066 GAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGAT 111125 |||| || | ||||| || | || | |||||| || || | || | | ||||| Sbjct 3010055 GAACGCCAATGCCAATGGGGCGATGCCTCATATTCGATTTCCTGGCCTCCGGCAGGGGAT 3009996 Query 111126 AAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAA 111185 || | || ||||||| | ||| ||||| |||| ||| |||| |||| || | | Sbjct 3009995 AATAGTTGATGTCAATAATCTTGTTCAGATTCTTGGCCACAGTCTTGGTGACCTCCTTCA 3009936 Query 111186 GTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT---TGACATACTTTGGAAGGGCGATTG 111242 | || | | |||| || || ||| ||| | ||| || | || ||||| | Sbjct 3009935 GCTTCTTAAAATC----GTACG--TCTTTTCGGGCGTCACAAACATGTTGAGAGCGATGG 3009882 Query 111243 ATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATA 111302 | |||| ||||| || || |||| || | |||||| | |||||||| || | Sbjct 3009881 ACGCCAGGTTGCAGACGGCGATCTCGTCGGGCGAGGAGTACTCGACGATTTCTGTGCACA 3009822 Query 111303 AGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCT 111362 ||| | ||| || || |||| ||||| || || |||||| ||||||||||||||| Sbjct 3009821 GATTGCTGCACTTGATGGTGCCCACATTCTGCTGATTGCTCTTCCTGTTGCACGCATCCT 3009762 Query 111363 TGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT 111422 || |||||||||| || | || |||||| ||| | | || || || || ||| Sbjct 3009761 TGAAGAGCATGTACGGATTGCCAGTCTCCACCTGCGCCTCGATGATGGCGAACC--ACAG 3009704 Query 111423 CGGCGGCTGGTACAATGGC--GTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 111480 | | | | | || | |||||| |||||| |||||||| || ||| || Sbjct 3009703 GGACTGAGCCTTAACTGTCCGATTGGCCTTTCCCTCGGCCTCGTATTTAAGGTACAGCTT 3009644 Query 111481 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 111540 |||||||| || ||| | | || || || || ||||| || || | || || Sbjct 3009643 CTCAAACTCGTCGCCCCACACATCCTGCAGGCCGGGACACTTGTGCGGGCACATTAGGGA 3009584 Query 111541 CCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 111600 ||| | || |||| || |||||||| || || || || ||||| |||| | || Sbjct 3009583 CCAGTTTTCATTCGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCAGAGGGCATAGAA 3009524 Query 111601 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 111660 ||||| | | ||| ||| || | || ||| | | || | |||||| | Sbjct 3009523 TAGATCGCGAGCACGATTCTCCTCCTTGCCGGTGTTCTTTTTCAGTTCCAAGAACTCGAA 3009464 Query 111661 GATATCCGCGTGCCATGGCTCAAGATAGA 111689 || ||||| |||||| ||||| | ||||| Sbjct 3009463 GACATCCGAGTGCCAGGGCTCCAAATAGA 3009435 >seq4678 Length=1229792 Score = 154 bits (170), Expect = 2e-32 Identities = 295/432 (68%), Gaps = 2/432 (0%) Strand=Plus/Plus Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 122429 ||| || || ||| ||||||||||||||||||||| ||||| || || | ||||| Sbjct 1146122 ATACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCCAT 1146181 Query 122430 AAAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGAC 122488 |||| || |||||||| | ||| | || | ||| |||| || | || |||| Sbjct 1146182 GAAGTTGAACGGATTCTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACC-AGCAGAC 1146240 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 |||| | |||| |||||||||||| |||||| ||| ||||||| ||||| || ||| Sbjct 1146241 GATCGGCCACAAACTCAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATTAA 1146300 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 || || || || || |||| | | |||||| || || || || | ||| || Sbjct 1146301 CCGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTCGA 1146360 Query 122609 GGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCT 122668 ||| ||| | |||| | || | || ||| | | ||| ||||| || Sbjct 1146361 TGATGCGCTCGCGCCTCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCAC 1146420 Query 122669 GGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGAC 122728 ||| ||||||||||| ||||| || || ||||| |||||| | ||| ||||| || | Sbjct 1146421 AGTGCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCAGGC 1146480 Query 122729 CCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 122788 | |||||||||| ||| |||| | | || ||| |||||| || ||||| || Sbjct 1146481 CGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTCGACGG 1146540 Query 122789 ACGCAAACGCAA 122800 |||||||||| Sbjct 1146541 CGGCAAACGCAA 1146552 >seq4198 Length=487851 Score = 122 bits (134), Expect = 1e-22 Identities = 334/502 (67%), Gaps = 26/502 (5%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || || |||||||| || || || | || ||||| | |||| || || ||||| Sbjct 57783 CGGTCGAAACGACCGGGCCGCAGCAATGCCGGGTCAAGCACATCCGGACGGTTGGTGGCG 57842 Query 11510 GCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGA 11566 ||||| | | | ||| |||||| ||||| ||||||||||| || | || Sbjct 57843 GCAATCAGGATCACGCCT---TCATTGCTTTCAAAACCATCCATCTCAACCAGCATCTGG 57899 Query 11567 TTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACC-ACCAGCACTGCGTTGCTTGCC 11625 || | ||| || || | ||||||||| || | || | ||| |||| || || || Sbjct 57900 TTCAGTGTCTGCTCGCGCTCATCATT-GCCGCCACCCATACCTGCACCACGATGGCGACC 57958 Query 11626 CACCGCATCAATCTCATCAATGAAGACAATACATGGT--TGATTTT---CGCGGGCGATT 11680 || |||||||| ||||||||||||| ||| || || ||||||| | | | | Sbjct 57959 AACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTACCCTG-----T 58013 Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG 11740 || || | || || || | ||||| ||||| || ||||| |||||||||| | Sbjct 58014 TCGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAA 58073 Query 11741 GCAGAGCACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11798 ||||| ||| | ||| || ||||| | |||||| || ||||| ||||| | |||| Sbjct 58074 CCAGAGA--TGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGG 58131 Query 11799 TCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACT 11856 | || || || || ||| ||| | || || ||||| ||| || || | || | Sbjct 58132 TTTTACCAGTGCCCGGCGGCCCCACAAGCAGCACGCCTTTGGGAATTTTACCGCCCAAGC 58191 Query 11857 TCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGC 11916 | ||| ||| | || | || ||||||||||| || || | |||||| |||| || Sbjct 58192 GCGTAAACTTCTGTGGGTCT--TTCAGAAAATCCACGATTTCCTGAAGTTCCCCTTTAGC 58249 Query 11917 CGCGTCAATCCCCTCAACATCA 11938 | |||||||| | |||||| Sbjct 58250 TTCATCAATCCCGGCTACATCA 58271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627991641093600