Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 185 1e-41
seq4678 154 2e-32
seq4198 122 1e-22
>seq4765
Length=3541379
Score = 185 bits (204), Expect = 1e-41
Identities = 638/989 (65%), Gaps = 17/989 (2%)
Strand=Plus/Minus
Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767
||||| || || ||||| || || ||| |||| || || |||| || || || |||||
Sbjct 3010413 TAGATATTCGTGGTGTACGGCTCGAAGGATTCGTTGTTGCCCATTATCTGGGCAGTGGAT 3010354
Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827
|| || ||||| || |||| | ||| ||| | || || | | |||||| ||||
Sbjct 3010353 GCCGTGGGCATGGGGGCCACGAGCAGAGAGTTTCTAACGCCGTGTTTCTTGATCGATTCC 3010294
Query 110828 TTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCTT--CCCACATGTCAAACTGAA 110885
|| || ||||||| || | | ||| | ||||| |||||||||| |||| |
Sbjct 3010293 TTCAGCTTTGCCCAGTCCCAGAGGTTCGTGGGT--ACCTTGTCCCACATGTCGTACTGGA 3010236
Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945
| | || | | | |||| ||||| |||||||||| | |||| | | | ||||
Sbjct 3010235 GGATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCATACGGGCCTTCGACCTGGGCCA 3010176
Query 110946 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 111005
|||||| || || ||||||| | | | ||| || ||||||||||| | |||||
Sbjct 3010175 GTTCACAACTGGCTTCCAGGGCTCCATAATATATCGTTTCAAAGATCTGTTGATTCAGGA 3010116
Query 111006 CCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTT 111065
|| || || || | | | | | || ||| || |||| ||||| || |
Sbjct 3010115 GACCCGCCTCCTCGCTTTCGTAGGGGAATCTCATCAGAATCAAGGCATCGGCGAGTCCCT 3010056
Query 111066 GAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGAT 111125
|||| || | ||||| || | || | |||||| || || | || | | |||||
Sbjct 3010055 GAACGCCAATGCCAATGGGGCGATGCCTCATATTCGATTTCCTGGCCTCCGGCAGGGGAT 3009996
Query 111126 AAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAA 111185
|| | || ||||||| | ||| ||||| |||| ||| |||| |||| || | |
Sbjct 3009995 AATAGTTGATGTCAATAATCTTGTTCAGATTCTTGGCCACAGTCTTGGTGACCTCCTTCA 3009936
Query 111186 GTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT---TGACATACTTTGGAAGGGCGATTG 111242
| || | | |||| || || ||| ||| | ||| || | || ||||| |
Sbjct 3009935 GCTTCTTAAAATC----GTACG--TCTTTTCGGGCGTCACAAACATGTTGAGAGCGATGG 3009882
Query 111243 ATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATA 111302
| |||| ||||| || || |||| || | |||||| | |||||||| || |
Sbjct 3009881 ACGCCAGGTTGCAGACGGCGATCTCGTCGGGCGAGGAGTACTCGACGATTTCTGTGCACA 3009822
Query 111303 AGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCT 111362
||| | ||| || || |||| ||||| || || |||||| |||||||||||||||
Sbjct 3009821 GATTGCTGCACTTGATGGTGCCCACATTCTGCTGATTGCTCTTCCTGTTGCACGCATCCT 3009762
Query 111363 TGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT 111422
|| |||||||||| || | || |||||| ||| | | || || || || |||
Sbjct 3009761 TGAAGAGCATGTACGGATTGCCAGTCTCCACCTGCGCCTCGATGATGGCGAACC--ACAG 3009704
Query 111423 CGGCGGCTGGTACAATGGC--GTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 111480
| | | | | || | |||||| |||||| |||||||| || ||| ||
Sbjct 3009703 GGACTGAGCCTTAACTGTCCGATTGGCCTTTCCCTCGGCCTCGTATTTAAGGTACAGCTT 3009644
Query 111481 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 111540
|||||||| || ||| | | || || || || ||||| || || | || ||
Sbjct 3009643 CTCAAACTCGTCGCCCCACACATCCTGCAGGCCGGGACACTTGTGCGGGCACATTAGGGA 3009584
Query 111541 CCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 111600
||| | || |||| || |||||||| || || || || ||||| |||| | ||
Sbjct 3009583 CCAGTTTTCATTCGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCAGAGGGCATAGAA 3009524
Query 111601 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 111660
||||| | | ||| ||| || | || ||| | | || | |||||| |
Sbjct 3009523 TAGATCGCGAGCACGATTCTCCTCCTTGCCGGTGTTCTTTTTCAGTTCCAAGAACTCGAA 3009464
Query 111661 GATATCCGCGTGCCATGGCTCAAGATAGA 111689
|| ||||| |||||| ||||| | |||||
Sbjct 3009463 GACATCCGAGTGCCAGGGCTCCAAATAGA 3009435
>seq4678
Length=1229792
Score = 154 bits (170), Expect = 2e-32
Identities = 295/432 (68%), Gaps = 2/432 (0%)
Strand=Plus/Plus
Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 122429
||| || || ||| ||||||||||||||||||||| ||||| || || | |||||
Sbjct 1146122 ATACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCCAT 1146181
Query 122430 AAAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGAC 122488
|||| || |||||||| | ||| | || | ||| |||| || | || ||||
Sbjct 1146182 GAAGTTGAACGGATTCTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACC-AGCAGAC 1146240
Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548
|||| | |||| |||||||||||| |||||| ||| ||||||| ||||| || |||
Sbjct 1146241 GATCGGCCACAAACTCAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATTAA 1146300
Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608
|| || || || || |||| | | |||||| || || || || | ||| ||
Sbjct 1146301 CCGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTCGA 1146360
Query 122609 GGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCT 122668
||| ||| | |||| | || | || ||| | | ||| ||||| ||
Sbjct 1146361 TGATGCGCTCGCGCCTCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCAC 1146420
Query 122669 GGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGAC 122728
||| ||||||||||| ||||| || || ||||| |||||| | ||| ||||| || |
Sbjct 1146421 AGTGCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCAGGC 1146480
Query 122729 CCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 122788
| |||||||||| ||| |||| | | || ||| |||||| || ||||| ||
Sbjct 1146481 CGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTCGACGG 1146540
Query 122789 ACGCAAACGCAA 122800
||||||||||
Sbjct 1146541 CGGCAAACGCAA 1146552
>seq4198
Length=487851
Score = 122 bits (134), Expect = 1e-22
Identities = 334/502 (67%), Gaps = 26/502 (5%)
Strand=Plus/Plus
Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509
|| || |||||||| || || || | || ||||| | |||| || || |||||
Sbjct 57783 CGGTCGAAACGACCGGGCCGCAGCAATGCCGGGTCAAGCACATCCGGACGGTTGGTGGCG 57842
Query 11510 GCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGA 11566
||||| | | | ||| |||||| ||||| ||||||||||| || | ||
Sbjct 57843 GCAATCAGGATCACGCCT---TCATTGCTTTCAAAACCATCCATCTCAACCAGCATCTGG 57899
Query 11567 TTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACC-ACCAGCACTGCGTTGCTTGCC 11625
|| | ||| || || | ||||||||| || | || | ||| |||| || || ||
Sbjct 57900 TTCAGTGTCTGCTCGCGCTCATCATT-GCCGCCACCCATACCTGCACCACGATGGCGACC 57958
Query 11626 CACCGCATCAATCTCATCAATGAAGACAATACATGGT--TGATTTT---CGCGGGCGATT 11680
|| |||||||| ||||||||||||| ||| || || ||||||| | | | |
Sbjct 57959 AACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTACCCTG-----T 58013
Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG 11740
|| || | || || || | ||||| ||||| || ||||| |||||||||| |
Sbjct 58014 TCGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAA 58073
Query 11741 GCAGAGCACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11798
||||| ||| | ||| || ||||| | |||||| || ||||| ||||| | ||||
Sbjct 58074 CCAGAGA--TGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGG 58131
Query 11799 TCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACT 11856
| || || || || ||| ||| | || || ||||| ||| || || | || |
Sbjct 58132 TTTTACCAGTGCCCGGCGGCCCCACAAGCAGCACGCCTTTGGGAATTTTACCGCCCAAGC 58191
Query 11857 TCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGC 11916
| ||| ||| | || | || ||||||||||| || || | |||||| |||| ||
Sbjct 58192 GCGTAAACTTCTGTGGGTCT--TTCAGAAAATCCACGATTTCCTGAAGTTCCCCTTTAGC 58249
Query 11917 CGCGTCAATCCCCTCAACATCA 11938
| |||||||| | ||||||
Sbjct 58250 TTCATCAATCCCGGCTACATCA 58271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627991641093600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |