Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq4678 172 7e-38
seq4198 89.7 6e-13
>seq4678
Length=1229792
Score = 172 bits (190), Expect = 7e-38
Identities = 309/449 (69%), Gaps = 2/449 (0%)
Strand=Plus/Plus
Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786
||| || || ||| |||||| |||||||| ||||| || |||| ||| |||||||
Sbjct 1146122 ATACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCCAT 1146181
Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846
|| | || || ||||| | ||| | || | ||| || | || || |||||
Sbjct 1146182 GAAGTTGAACGGATTCTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACCAGCAGACG 1146241
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
||| | || |||||||||||| |||||| || ||||||| ||||| || |||
Sbjct 1146242 ATCGGCCACAAACTCAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATTAAC 1146301
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| || || || || |||| ||| ||||||||||||||| || || | ||| ||
Sbjct 1146302 CGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTCGAT 1146361
Query 129967 AATGGTCTCCGTGCC-AGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCT 130025
||| || || ||| |||| | || | || ||| | ||| ||||| ||
Sbjct 1146362 GATGCGCT-CGCGCCTCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCAC 1146420
Query 130026 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 130085
||| |||||||| || |||||||| || ||||| |||||| || ||| ||||| || |
Sbjct 1146421 AGTGCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCAGGC 1146480
Query 130086 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 130145
| |||||||||| ||||||||| | ||| ||| |||||| || ||||| ||
Sbjct 1146481 CGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTCGACGG 1146540
Query 130146 ACGCGAACGCAAAGAGACGCTCAGCAAAG 130174
|| ||||||| || ||||| |||||
Sbjct 1146541 CGGCAAACGCAATGATGCGCTCCCCAAAG 1146569
>seq4198
Length=487851
Score = 89.7 bits (98), Expect = 6e-13
Identities = 249/374 (67%), Gaps = 10/374 (3%)
Strand=Plus/Plus
Query 14059 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 14118
|| ||| || || ||||| || || || | || |||||| | ||| ||||| ||
Sbjct 57779 CTGACGGTCGAAACGACCGGGCCGCAGCAATGCCGGGTCAAGCACATCCGGACGGTTGGT 57838
Query 14119 CGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTG 14178
|| || || | | | ||| | | | ||||| |||||||||||| || | ||
Sbjct 57839 GGCGGCAATCAGGATCACGCCTTCATTGCTTTCAAAACCATCCATCTCAACCAGCATCTG 57898
Query 14179 ATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATAC-CACCCGCACTGCGTTGCTTAC 14237
|| | || || ||||| |||||||| || | || | ||| |||| || || ||
Sbjct 57899 GTTCAGTGTCTGCTCGCGCTCATCATT-GCCGCCACCCATACCTGCACCACGATGGCGAC 57957
Query 14238 CGACGGCGTCAATTTCATCGATGAAAACGATACATG--GTTGA-TTTTCACGGGCAACTT 14294
| ||||| ||||||||||| ||||| | || || | | ||| |||| || | ||
Sbjct 57958 CAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTAC---CCTGTT 58014
Query 14295 CAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGG 14354
| || || || ||||| | ||||| ||||| || ||||| |||||||| | ||
Sbjct 58015 CGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAAC 58074
Query 14355 CGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413
| | | || | | ||| || || || | |||||| || ||||| ||||| | |||||
Sbjct 58075 CAG-AGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGGTT 58133
Query 14414 TTCCCCGTCCCTGG 14427
|| || || || ||
Sbjct 58134 TTACCAGTGCCCGG 58147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618395457807960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |