Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4678 172 7e-38 seq4198 89.7 6e-13 >seq4678 Length=1229792 Score = 172 bits (190), Expect = 7e-38 Identities = 309/449 (69%), Gaps = 2/449 (0%) Strand=Plus/Plus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || ||| |||||| |||||||| ||||| || |||| ||| ||||||| Sbjct 1146122 ATACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCCAT 1146181 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || | || || ||||| | ||| | || | ||| || | || || ||||| Sbjct 1146182 GAAGTTGAACGGATTCTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACCAGCAGACG 1146241 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | || |||||||||||| |||||| || ||||||| ||||| || ||| Sbjct 1146242 ATCGGCCACAAACTCAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATTAAC 1146301 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || || |||| ||| ||||||||||||||| || || | ||| || Sbjct 1146302 CGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTCGAT 1146361 Query 129967 AATGGTCTCCGTGCC-AGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCT 130025 ||| || || ||| |||| | || | || ||| | ||| ||||| || Sbjct 1146362 GATGCGCT-CGCGCCTCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCAC 1146420 Query 130026 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 130085 ||| |||||||| || |||||||| || ||||| |||||| || ||| ||||| || | Sbjct 1146421 AGTGCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCAGGC 1146480 Query 130086 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 130145 | |||||||||| ||||||||| | ||| ||| |||||| || ||||| || Sbjct 1146481 CGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTCGACGG 1146540 Query 130146 ACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || ||||||| || ||||| ||||| Sbjct 1146541 CGGCAAACGCAATGATGCGCTCCCCAAAG 1146569 >seq4198 Length=487851 Score = 89.7 bits (98), Expect = 6e-13 Identities = 249/374 (67%), Gaps = 10/374 (3%) Strand=Plus/Plus Query 14059 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 14118 || ||| || || ||||| || || || | || |||||| | ||| ||||| || Sbjct 57779 CTGACGGTCGAAACGACCGGGCCGCAGCAATGCCGGGTCAAGCACATCCGGACGGTTGGT 57838 Query 14119 CGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTG 14178 || || || | | | ||| | | | ||||| |||||||||||| || | || Sbjct 57839 GGCGGCAATCAGGATCACGCCTTCATTGCTTTCAAAACCATCCATCTCAACCAGCATCTG 57898 Query 14179 ATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATAC-CACCCGCACTGCGTTGCTTAC 14237 || | || || ||||| |||||||| || | || | ||| |||| || || || Sbjct 57899 GTTCAGTGTCTGCTCGCGCTCATCATT-GCCGCCACCCATACCTGCACCACGATGGCGAC 57957 Query 14238 CGACGGCGTCAATTTCATCGATGAAAACGATACATG--GTTGA-TTTTCACGGGCAACTT 14294 | ||||| ||||||||||| ||||| | || || | | ||| |||| || | || Sbjct 57958 CAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTAC---CCTGTT 58014 Query 14295 CAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGG 14354 | || || || ||||| | ||||| ||||| || ||||| |||||||| | || Sbjct 58015 CGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAAC 58074 Query 14355 CGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413 | | | || | | ||| || || || | |||||| || ||||| ||||| | ||||| Sbjct 58075 CAG-AGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGGTT 58133 Query 14414 TTCCCCGTCCCTGG 14427 || || || || || Sbjct 58134 TTACCAGTGCCCGG 58147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618395457807960