Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq16 122 1e-22
seq4198 114 2e-20
seq4774 82.4 9e-11
>seq16
Length=193047
Score = 122 bits (134), Expect = 1e-22
Identities = 277/411 (67%), Gaps = 12/411 (3%)
Strand=Plus/Plus
Query 9484 CTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGACG 9543
||| || || |||||| ||| || | ||| || ||||| ||||| |||||||||||
Sbjct 6862 CTCTCGACCACGAACATCTGGTTGACCAACTAAAATTTTACGGTCAAATCGACCTGGACG 6921
Query 9544 AAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT 9603
| | || |||||| | |||| || || || ||||| ||||||| | |||
Sbjct 6922 AGTCAAAGCTGGATCAAGAACATCAGAACGGTTAGTTGCGGCAATGACAATGACACC--- 6978
Query 9604 TTCATTATC---AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTC 9660
|||||| | |||||||||||| || || ||||| |||| |||||||| |||||
Sbjct 6979 TTCATTCCCTGTAAAACCATCCATTTCAACTAATAGTTGATTAAGGGTTTGTTCACGTTC 7038
Query 9661 ATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCA 9718
||| | | || ||| || | | |||| ||| ||||||||||| ||||||
Sbjct 7039 ATCGT--GACCGCCGCCCATTCCGGATCCACGTTTTCGTCCAACGGCATCAATTTCATCA 7096
Query 9719 ATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG 9778
|| |||| ||| |||| ||||| || |||| | ||| | || || |
Sbjct 7097 ATAAAGATGATTGCTGGTGCATTTTTCTTGGCTTGGGCAAATAAATCTCTAACCCGGCTA 7156
Query 9779 GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGAT-GAAGGGGAC 9837
|| || ||||| |||||||| || || || | || | | | | || || ||| || ||
Sbjct 7157 GCACCAACACCCACAAACATTTCAACGAAATCTGATCCAG-ATAATGAATAGAATGGAAC 7215
Query 9838 ATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
||| | |||||| |||| ||| || || | |||||||| ||||| ||
Sbjct 7216 ATTTGCTTCACCAGCAACCGCTTTAGCTAGCAAGGTCTTACCGGTACCAGG 7266
>seq4198
Length=487851
Score = 114 bits (126), Expect = 2e-20
Identities = 275/407 (68%), Gaps = 12/407 (3%)
Strand=Plus/Plus
Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670
||||||||||||||||| || | ||||| | || || || || |||||||| ||
Sbjct 57870 TCAAAACCATCCATCTCAACCAGCATCTGGTTCAGTGTCTGCTCGCGCTCATCATT-GCC 57928
Query 9671 GGCATACC-ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 9729
| || | ||| |||| || || || ||||||||||| ||||||||||||| ||
Sbjct 57929 GCCACCCATACCTGCACCACGATGGCGACCAACGGCATCAATTTCATCAATGAAGATAAT 57988
Query 9730 GCATG--GTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787
||| | | ||||||| | | ||| || | || || ||||| || || |||
Sbjct 57989 GCAAGGAGCTGATTTT--TTACCCTGTTCGAACATGTCACGCACACGGGATGCACCAACA 58046
Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9846
|| || ||||| |||||||||| | | | | || | | ||| || ||||| | |||
Sbjct 58047 CCTACGAACATTTCCACAAAGTCGGAACCAG-AGATGGTAAAGAACGGTACATTGGCTTC 58105
Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906
||| |||||||| ||||| | || || ||||| || || ||| ||| | || || |
Sbjct 58106 ACCTGCAATGGCGCGGGCCAACAGGGTTTTACCAGTGCCCGGCGGCCCCACAAGCAGCAC 58165
Query 9907 ACCTCGTGGAATCTTGGCGCC--ACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCC 9964
||| ||||| || |||| | | || | ||| || | || |||||||||
Sbjct 58166 GCCTTTGGGAATTTTACCGCCCAAGCGCGTAA--ACTTCTGTGGGTCTTTCAGAAAATCC 58223
Query 9965 ACAATTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011
|| ||||| | | ||| |||| || | |||||||| | |||||
Sbjct 58224 ACGATTTCCTGAAGTTCCCCTTTAGCTTCATCAATCCCGGCTACATC 58270
>seq4774
Length=608034
Score = 82.4 bits (90), Expect = 9e-11
Identities = 164/243 (67%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 168454 CGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGAT 168513
|| |||||| || || | | ||| ||||| |||||||| | ||||| ||||| || ||
Sbjct 452681 CGAATCCTTGCCGCCGGTCAAACGGGTACCGAACTGACCCCGGGGCTCCAGAAGGTTTAT 452740
Query 168514 ATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTC 168573
||||| || |||| |||| | |||| || ||||| || ||| ||||| ||
Sbjct 452741 GTTGTTGGATCCCACATAGTTCTGGGCCAGATTCACAATGGTCATTTGGAGGGAGACCTC 452800
Query 168574 ACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 168633
||||| || || || | |||| || || | | | | ||||||||||| | |||
Sbjct 452801 GCCGTGATGATAGGCCGACATCTCGGCCACCGAACCGGAAAGTTGCGCCACTTTAACCTC 452860
Query 168634 ATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 168693
||| ||| | | |||||| | |||||||||| || || ||||| || ||
Sbjct 452861 TCGCTTATCGTTCCTCTTGAAGCAGGTAAACATAACCTTACGCTGGCCCGGCTTCAGGCC 452920
Query 168694 ATC 168696
|||
Sbjct 452921 ATC 452923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583223318202840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |