Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq16 122 1e-22 seq4198 114 2e-20 seq4774 82.4 9e-11 >seq16 Length=193047 Score = 122 bits (134), Expect = 1e-22 Identities = 277/411 (67%), Gaps = 12/411 (3%) Strand=Plus/Plus Query 9484 CTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGACG 9543 ||| || || |||||| ||| || | ||| || ||||| ||||| ||||||||||| Sbjct 6862 CTCTCGACCACGAACATCTGGTTGACCAACTAAAATTTTACGGTCAAATCGACCTGGACG 6921 Query 9544 AAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT 9603 | | || |||||| | |||| || || || ||||| ||||||| | ||| Sbjct 6922 AGTCAAAGCTGGATCAAGAACATCAGAACGGTTAGTTGCGGCAATGACAATGACACC--- 6978 Query 9604 TTCATTATC---AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTC 9660 |||||| | |||||||||||| || || ||||| |||| |||||||| ||||| Sbjct 6979 TTCATTCCCTGTAAAACCATCCATTTCAACTAATAGTTGATTAAGGGTTTGTTCACGTTC 7038 Query 9661 ATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCA 9718 ||| | | || ||| || | | |||| ||| ||||||||||| |||||| Sbjct 7039 ATCGT--GACCGCCGCCCATTCCGGATCCACGTTTTCGTCCAACGGCATCAATTTCATCA 7096 Query 9719 ATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG 9778 || |||| ||| |||| ||||| || |||| | ||| | || || | Sbjct 7097 ATAAAGATGATTGCTGGTGCATTTTTCTTGGCTTGGGCAAATAAATCTCTAACCCGGCTA 7156 Query 9779 GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGAT-GAAGGGGAC 9837 || || ||||| |||||||| || || || | || | | | | || || ||| || || Sbjct 7157 GCACCAACACCCACAAACATTTCAACGAAATCTGATCCAG-ATAATGAATAGAATGGAAC 7215 Query 9838 ATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||| | |||||| |||| ||| || || | |||||||| ||||| || Sbjct 7216 ATTTGCTTCACCAGCAACCGCTTTAGCTAGCAAGGTCTTACCGGTACCAGG 7266 >seq4198 Length=487851 Score = 114 bits (126), Expect = 2e-20 Identities = 275/407 (68%), Gaps = 12/407 (3%) Strand=Plus/Plus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 ||||||||||||||||| || | ||||| | || || || || |||||||| || Sbjct 57870 TCAAAACCATCCATCTCAACCAGCATCTGGTTCAGTGTCTGCTCGCGCTCATCATT-GCC 57928 Query 9671 GGCATACC-ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 9729 | || | ||| |||| || || || ||||||||||| ||||||||||||| || Sbjct 57929 GCCACCCATACCTGCACCACGATGGCGACCAACGGCATCAATTTCATCAATGAAGATAAT 57988 Query 9730 GCATG--GTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 ||| | | ||||||| | | ||| || | || || ||||| || || ||| Sbjct 57989 GCAAGGAGCTGATTTT--TTACCCTGTTCGAACATGTCACGCACACGGGATGCACCAACA 58046 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9846 || || ||||| |||||||||| | | | | || | | ||| || ||||| | ||| Sbjct 58047 CCTACGAACATTTCCACAAAGTCGGAACCAG-AGATGGTAAAGAACGGTACATTGGCTTC 58105 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 ||| |||||||| ||||| | || || ||||| || || ||| ||| | || || | Sbjct 58106 ACCTGCAATGGCGCGGGCCAACAGGGTTTTACCAGTGCCCGGCGGCCCCACAAGCAGCAC 58165 Query 9907 ACCTCGTGGAATCTTGGCGCC--ACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCC 9964 ||| ||||| || |||| | | || | ||| || | || ||||||||| Sbjct 58166 GCCTTTGGGAATTTTACCGCCCAAGCGCGTAA--ACTTCTGTGGGTCTTTCAGAAAATCC 58223 Query 9965 ACAATTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 || ||||| | | ||| |||| || | |||||||| | ||||| Sbjct 58224 ACGATTTCCTGAAGTTCCCCTTTAGCTTCATCAATCCCGGCTACATC 58270 >seq4774 Length=608034 Score = 82.4 bits (90), Expect = 9e-11 Identities = 164/243 (67%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 168454 CGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGAT 168513 || |||||| || || | | ||| ||||| |||||||| | ||||| ||||| || || Sbjct 452681 CGAATCCTTGCCGCCGGTCAAACGGGTACCGAACTGACCCCGGGGCTCCAGAAGGTTTAT 452740 Query 168514 ATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTC 168573 ||||| || |||| |||| | |||| || ||||| || ||| ||||| || Sbjct 452741 GTTGTTGGATCCCACATAGTTCTGGGCCAGATTCACAATGGTCATTTGGAGGGAGACCTC 452800 Query 168574 ACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 168633 ||||| || || || | |||| || || | | | | ||||||||||| | ||| Sbjct 452801 GCCGTGATGATAGGCCGACATCTCGGCCACCGAACCGGAAAGTTGCGCCACTTTAACCTC 452860 Query 168634 ATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 168693 ||| ||| | | |||||| | |||||||||| || || ||||| || || Sbjct 452861 TCGCTTATCGTTCCTCTTGAAGCAGGTAAACATAACCTTACGCTGGCCCGGCTTCAGGCC 452920 Query 168694 ATC 168696 ||| Sbjct 452921 ATC 452923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583223318202840