Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq5094 178 4e-39
seq4765 170 6e-37
seq4926 161 3e-34
seq4644 125 2e-23
seq4837 120 9e-22
seq4903 100 9e-16
seq4198 100 9e-16
seq4754 89.7 2e-12
>seq5094
Length=366253
Score = 178 bits (196), Expect = 4e-39
Identities = 231/316 (73%), Gaps = 5/316 (2%)
Strand=Plus/Plus
Query 349576 TGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTT 349635
|||||||| || | || || || || | | | || ||||||||||| || || || ||
Sbjct 124254 TGCTGAAGATTACATTGGCGACACTGTTAGTCAAGCAGTTATTACTGTTCCTGCTTACTT 124313
Query 349636 TAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCT 349695
||||||||| || ||| || || |||||||| || | ||||| || | |||||
Sbjct 124314 TAATGATGCTCAACGTCAAGCTACCAAAGATGCCGGTAAAATTGCCGGACTTGATGTTAA 124373
Query 349696 AAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGA 349755
|||||| ||||||||||| ||||| || || |||||||||| | |||||| | ||
Sbjct 124374 AAGAATTATTAATGAACCTACTGCAGCTTCACTTGCATATGGTTTAGATAAA---AAAGA 124430
Query 349756 CCAAGaaaaaaaTATTCTTA-TTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTAC 349814
| |||| |||| | ||||| ||| |||||||||||| |||||||||||||| || | |
Sbjct 124431 CAAAGATGAAAA-AATCTTAGTTTATGATTTAGGTGGAGGTACTTTTGATGTTTCTGTCC 124489
Query 349815 TAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTG 349874
| | | | || ||| | || ||||| ||||| ||||||||| || | ||||
Sbjct 124490 TTGAATTAGGGGATGGAGTCTTCCAAGTTCTTTCAACTAATGGTGATACCCACTTAGGTG 124549
Query 349875 GAGAAGATTTTGATAA 349890
|||| ||||| |||||
Sbjct 124550 GAGATGATTTCGATAA 124565
>seq4765
Length=3541379
Score = 170 bits (188), Expect = 6e-37
Identities = 156/197 (79%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 140541 GTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCA 140600
|||||||| || ||||| ||||| ||||| | || || |||||||| || || || |||
Sbjct 2921430 GTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 2921489
Query 140601 GCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT 140660
|||||||| ||||| |||||||| ||||||||||||||||| |||||||| || |||||
Sbjct 2921490 GCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 2921549
Query 140661 ACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTT 140720
||||| || || | || || ||||| || ||||| || | ||||| || || || ||
Sbjct 2921550 ACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTC 2921609
Query 140721 TTTACAAAAATCTGCAT 140737
|| || || ||||||||
Sbjct 2921610 TTCACGAAGATCTGCAT 2921626
>seq4926
Length=895355
Score = 161 bits (178), Expect = 3e-34
Identities = 543/840 (65%), Gaps = 9/840 (1%)
Strand=Plus/Plus
Query 349586 TATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCC 349645
||||| || | || || | || || || || || || || || ||||| || || |
Sbjct 843024 TATTTGGGCGGAAAGGTGAAGGACGCCGTGATCACGGTGCCGGCTTATTTCAACGACAGC 843083
Query 349646 CAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATT 349705
||| | || || || ||||| ||| |||||| ||| | ||||| || ||||| ||
Sbjct 843084 CAGAGGCAGGCCACCAAGGATGCGGGCTCCATTGCAGGGCTTAATGTGCTGAGAATCATC 843143
Query 349706 AATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaa 349765
||||||||||| ||||| || | || || || || ||||| | | |||
Sbjct 843144 AATGAACCCACGGCTGCTGCCTTGGCCTACGGACTCGATAAGAACCTCAAGGGAGAGCGC 843203
Query 349766 aaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAA 349825
||| | || || || || | ||||| || ||||| ||||| || | || || | ||
Sbjct 843204 AATGTACTCATCTTCGACCTGGGTGGCGGCACTTTCGATGTCTCCATTCTGACCATCGAT 843263
Query 349826 GAGGG---AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGAT 349882
|| || | ||||| || || || || ||||| || || || | ||||| || ||
Sbjct 843264 GAAGGCTCCCTGTTTGAGGTGAAGGCCACGGCTGGAGACACCCACTTGGGTGGCGAGGAC 843323
Query 349883 TTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGA 349941
|||||||| || | || ||||||| | || |||||||| ||||| ||| ||
Sbjct 843324 TTTGATAACCGAATGGTGAACCATTTTGCGACGGAGTTTAAGCG-CAAGCATAACGCCGA 843382
Query 349942 TATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCG 350001
||| | ||| | || || || | || || | || || |||||| | || ||| |
Sbjct 843383 TATCAAGGGCAATGCCAGGGCTTTGAGGCGTCTGCGGACAGCTTGTGAAAGGGCCAAGAG 843442
Query 350002 TTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGA 350061
|||| ||||| | || | | || | || |||||| |||| || ||| ||
Sbjct 843443 GACCTTGTCATCCAGCACAGAGGCTTCCCTGGAGATTGATGCTCTGCACGAGGGCGTTGA 843502
Query 350062 TTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGC 350121
||||| ||| || | ||||| || || || || | ||||| || || | |
Sbjct 843503 TTTCTATTCGAAGATATCGCGTGCCCGCTTCGAGGAGCTGAACATGGACCTCTTCCGGTC 843562
Query 350122 AACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGA 350181
|| ||| | || ||||| || || | ||||| |||||| ||| || | || |
Sbjct 843563 CACTATGCAGCCGGTGGAGCGAGCCTTGAGCGATGCCAAAATGGACAAGAAGGACATCAA 843622
Query 350182 TGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGA 350241
|| || ||| | || || || || || || || ||||| | ||| | | | ||
Sbjct 843623 CGACGTGGTTCTGGTGGGCGGCTCCACGCGAATCCCAAAGATACAAAAACTTTTGCAGGA 843682
Query 350242 GTTTTTTAATGGCAAAGAACCTT--CTAGATCAATTAATCCAGATGAAGCTGTTGCATAT 350299
|| ||||||||||| ||| || | || || ||||| |||||||| || || ||
Sbjct 843683 TTTCTTTAATGGCAA--AACTTTGAATCTCTCCATCAATCCTGATGAAGCGGTGGCCTAC 843740
Query 350300 GGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTA 350359
|| || || |||||| | ||||| | ||||| || ||||| || | || ||
Sbjct 843741 GGAGCGGCAGTTCAGTCTGCTATTCTCTCTGGCGTGGGCAGCTCTAAGATCCAGGACCTG 843800
Query 350360 TTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACT 350419
| || | ||||| ||||| | ||||| ||| | ||||| | || | ||| ||||||
Sbjct 843801 CTTCTGGTGGATGTGACTCCCTTGTCGCTGGGAATTGAAACCGCCGGCGGAGTGATGACT 843860
>seq4644
Length=1132839
Score = 125 bits (138), Expect = 2e-23
Identities = 154/209 (74%), Gaps = 1/209 (0%)
Strand=Plus/Minus
Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589
|||| || || || ||||| || || || || || || || | || || || ||||| |
Sbjct 752286 CAAG-TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCTTCCA 752228
Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649
| || || ||||| ||||| | ||| |||||||| ||||| ||||| || || ||||| |
Sbjct 752227 GCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGA 752168
Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709
| || || || ||||| ||||| | || ||||| || || || | || | |||||||
Sbjct 752167 TCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTCTTTC 752108
Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738
|||| || || || || || |||||||||
Sbjct 752107 CGGTAAGAGTCTTCACGAAGATCTGCATT 752079
Score = 123 bits (136), Expect = 8e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
|| || | ||| || || ||||| || || || || || || || | || || || ||
Sbjct 752519 AGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCC 752460
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|| || || || || || ||||| | ||| |||||||| ||||| ||||| || || |||
Sbjct 752459 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCC 752400
Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705
|| || || || || ||||| ||||| | || ||||| || || || | || | |||
Sbjct 752399 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTC 752340
Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738
|||||||| || || || ||||| |||||||||
Sbjct 752339 TTTCCGGTCAGGGTCTTCACAAAGATCTGCATT 752307
>seq4837
Length=1611981
Score = 120 bits (132), Expect = 9e-22
Identities = 246/364 (68%), Gaps = 5/364 (1%)
Strand=Plus/Minus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
||||| ||||| || | |||||| | | || |||||||| | ||||| || ||| |
Sbjct 528979 CCCGAGGAAATCTCCGCCATGGTTCTCGGCAAGATGAAGGAGACCGCTGAGGCCTATCTG 528920
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
|| | | || || |||||||| | ||||| || ||||| || || ||||||||||||
Sbjct 528919 GGCAAGAAGGTTACCCATGCTGTTGTCACTGTCCCGGCCTACTTCAACGATGCCCAGCGT 528860
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|| || || ||||| || ||||| || | |||| | | || || || |||
Sbjct 528859 CAGGCGACCAAGGATGCCGGTGTGATTGCTGGTCTCCATGTGATGCGCATCATCAACGAA 528800
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAA-AATGAGTGACCAAGaaaaaaaTAT 349770
|| |||||||| || ||||| || || || || || || ||| | || || ||| |
Sbjct 528799 CCGACTGCTGCGGCTATTGCCTACGGTCTGGACAAGAAGGAGGG----CGAGAAGAATGT 528744
Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830
|| | || ||| | ||||| ||||| || ||||| || || || || |||| | ||
Sbjct 528743 GCTGGTGTTCGATCTGGGTGGCGGTACCTTCGATGTCTCCCTGCTGACCATTGATAACGG 528684
Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890
| || || || || || |||||||| ||| | || || || || || ||| |
Sbjct 528683 TGTGTTCGAGGTGGTGGCCACCAACGGTGATACCCATTTGGGCGGTGAGGACTTCGATCA 528624
Query 349891 TCGT 349894
|||
Sbjct 528623 GCGT 528620
>seq4903
Length=2073822
Score = 100 bits (110), Expect = 9e-16
Identities = 185/267 (69%), Gaps = 6/267 (2%)
Strand=Plus/Plus
Query 378183 ATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGT 378242
|||||| | ||||||| || | || || || || ||||| ||||||||||||
Sbjct 76475 ATCATAGTTCACCATTACCGACTCCATGGCCTTGATGAGACGTCGCTGAATATAACCAGT 76534
Query 378243 TT-GACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGA 378301
|| | || || ||||| || |||||||| | ||| ||||||| ||||| ||||||||
Sbjct 76535 TTCGGCT-GTCTTAACGGCGGTATCAATAAGACCCTCACGACCTCCCATGGCATGGAAAT 76593
Query 378302 ATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTG 378361
| || |||| || || | || | | | | ||| |||| | ||| || | ||| ||
Sbjct 76594 AGAACTCAGAGGGTGTCAAACCGGCCAGATAGGAATTCTCCACAAAACCAC--GCGACTC 76651
Query 378362 GCGA--ATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAAT 378419
| || || ||||| || | |||| || ||||| || || || ||||| || ||
Sbjct 76652 GGGACCATAATCATCCTTGATGAAATGCGGCAATGTGCGCTTACGGAATCCATAGGGTAT 76711
Query 378420 TCGTTTTCCATCAACATTCTGTTGACC 378446
||||| || || |||||||| || ||
Sbjct 76712 ACGTTTACCCTCCACATTCTGCTGGCC 76738
>seq4198
Length=487851
Score = 100 bits (110), Expect = 9e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621
|| |||||||||| |||||| | ||| | ||||||| ||| || | |||||||| ||
Sbjct 465853 AAGATGAAGGAAACGGCTGAATCCTATCTGGGTGAAAAAGTTTCTCAGGCTGTTATCACG 465912
Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681
|| || || || ||||| |||||||||||| || || || ||||| || | |||||
Sbjct 465913 GTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCCACCAAGGATGCAGGTAAGATTGCT 465972
Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741
|| | | || || | || || || |||||||| || || || | || || |||||
Sbjct 465973 GGCCTTGAAGTGCTGCGTATCATCAACGAACCCACAGCGGCTGCTCTGGCTTACGGGCTG 466032
Query 349742 GATAA 349746
|| ||
Sbjct 466033 GAAAA 466037
>seq4754
Length=2324671
Score = 89.7 bits (98), Expect = 2e-12
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 235889 GGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAA 235948
||||||||||| ||| ||||||| ||||||||| ||||| ||||||||| |||||| |
Sbjct 1046605 GGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACGGGGATCGAT 1046664
Query 235949 ACCCAGCATCTCCA 235962
|||| |||||||||
Sbjct 1046665 ACCCCGCATCTCCA 1046678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515154591613223
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