Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5094 178 4e-39 seq4765 170 6e-37 seq4926 161 3e-34 seq4644 125 2e-23 seq4837 120 9e-22 seq4903 100 9e-16 seq4198 100 9e-16 seq4754 89.7 2e-12 >seq5094 Length=366253 Score = 178 bits (196), Expect = 4e-39 Identities = 231/316 (73%), Gaps = 5/316 (2%) Strand=Plus/Plus Query 349576 TGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTT 349635 |||||||| || | || || || || | | | || ||||||||||| || || || || Sbjct 124254 TGCTGAAGATTACATTGGCGACACTGTTAGTCAAGCAGTTATTACTGTTCCTGCTTACTT 124313 Query 349636 TAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCT 349695 ||||||||| || ||| || || |||||||| || | ||||| || | ||||| Sbjct 124314 TAATGATGCTCAACGTCAAGCTACCAAAGATGCCGGTAAAATTGCCGGACTTGATGTTAA 124373 Query 349696 AAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGA 349755 |||||| ||||||||||| ||||| || || |||||||||| | |||||| | || Sbjct 124374 AAGAATTATTAATGAACCTACTGCAGCTTCACTTGCATATGGTTTAGATAAA---AAAGA 124430 Query 349756 CCAAGaaaaaaaTATTCTTA-TTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTAC 349814 | |||| |||| | ||||| ||| |||||||||||| |||||||||||||| || | | Sbjct 124431 CAAAGATGAAAA-AATCTTAGTTTATGATTTAGGTGGAGGTACTTTTGATGTTTCTGTCC 124489 Query 349815 TAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTG 349874 | | | | || ||| | || ||||| ||||| ||||||||| || | |||| Sbjct 124490 TTGAATTAGGGGATGGAGTCTTCCAAGTTCTTTCAACTAATGGTGATACCCACTTAGGTG 124549 Query 349875 GAGAAGATTTTGATAA 349890 |||| ||||| ||||| Sbjct 124550 GAGATGATTTCGATAA 124565 >seq4765 Length=3541379 Score = 170 bits (188), Expect = 6e-37 Identities = 156/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 140541 GTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCA 140600 |||||||| || ||||| ||||| ||||| | || || |||||||| || || || ||| Sbjct 2921430 GTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 2921489 Query 140601 GCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT 140660 |||||||| ||||| |||||||| ||||||||||||||||| |||||||| || ||||| Sbjct 2921490 GCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 2921549 Query 140661 ACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTT 140720 ||||| || || | || || ||||| || ||||| || | ||||| || || || || Sbjct 2921550 ACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTC 2921609 Query 140721 TTTACAAAAATCTGCAT 140737 || || || |||||||| Sbjct 2921610 TTCACGAAGATCTGCAT 2921626 >seq4926 Length=895355 Score = 161 bits (178), Expect = 3e-34 Identities = 543/840 (65%), Gaps = 9/840 (1%) Strand=Plus/Plus Query 349586 TATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCC 349645 ||||| || | || || | || || || || || || || || ||||| || || | Sbjct 843024 TATTTGGGCGGAAAGGTGAAGGACGCCGTGATCACGGTGCCGGCTTATTTCAACGACAGC 843083 Query 349646 CAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATT 349705 ||| | || || || ||||| ||| |||||| ||| | ||||| || ||||| || Sbjct 843084 CAGAGGCAGGCCACCAAGGATGCGGGCTCCATTGCAGGGCTTAATGTGCTGAGAATCATC 843143 Query 349706 AATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaa 349765 ||||||||||| ||||| || | || || || || ||||| | | ||| Sbjct 843144 AATGAACCCACGGCTGCTGCCTTGGCCTACGGACTCGATAAGAACCTCAAGGGAGAGCGC 843203 Query 349766 aaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAA 349825 ||| | || || || || | ||||| || ||||| ||||| || | || || | || Sbjct 843204 AATGTACTCATCTTCGACCTGGGTGGCGGCACTTTCGATGTCTCCATTCTGACCATCGAT 843263 Query 349826 GAGGG---AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGAT 349882 || || | ||||| || || || || ||||| || || || | ||||| || || Sbjct 843264 GAAGGCTCCCTGTTTGAGGTGAAGGCCACGGCTGGAGACACCCACTTGGGTGGCGAGGAC 843323 Query 349883 TTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGA 349941 |||||||| || | || ||||||| | || |||||||| ||||| ||| || Sbjct 843324 TTTGATAACCGAATGGTGAACCATTTTGCGACGGAGTTTAAGCG-CAAGCATAACGCCGA 843382 Query 349942 TATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCG 350001 ||| | ||| | || || || | || || | || || |||||| | || ||| | Sbjct 843383 TATCAAGGGCAATGCCAGGGCTTTGAGGCGTCTGCGGACAGCTTGTGAAAGGGCCAAGAG 843442 Query 350002 TTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGA 350061 |||| ||||| | || | | || | || |||||| |||| || ||| || Sbjct 843443 GACCTTGTCATCCAGCACAGAGGCTTCCCTGGAGATTGATGCTCTGCACGAGGGCGTTGA 843502 Query 350062 TTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGC 350121 ||||| ||| || | ||||| || || || || | ||||| || || | | Sbjct 843503 TTTCTATTCGAAGATATCGCGTGCCCGCTTCGAGGAGCTGAACATGGACCTCTTCCGGTC 843562 Query 350122 AACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGA 350181 || ||| | || ||||| || || | ||||| |||||| ||| || | || | Sbjct 843563 CACTATGCAGCCGGTGGAGCGAGCCTTGAGCGATGCCAAAATGGACAAGAAGGACATCAA 843622 Query 350182 TGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGA 350241 || || ||| | || || || || || || || ||||| | ||| | | | || Sbjct 843623 CGACGTGGTTCTGGTGGGCGGCTCCACGCGAATCCCAAAGATACAAAAACTTTTGCAGGA 843682 Query 350242 GTTTTTTAATGGCAAAGAACCTT--CTAGATCAATTAATCCAGATGAAGCTGTTGCATAT 350299 || ||||||||||| ||| || | || || ||||| |||||||| || || || Sbjct 843683 TTTCTTTAATGGCAA--AACTTTGAATCTCTCCATCAATCCTGATGAAGCGGTGGCCTAC 843740 Query 350300 GGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTA 350359 || || || |||||| | ||||| | ||||| || ||||| || | || || Sbjct 843741 GGAGCGGCAGTTCAGTCTGCTATTCTCTCTGGCGTGGGCAGCTCTAAGATCCAGGACCTG 843800 Query 350360 TTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACT 350419 | || | ||||| ||||| | ||||| ||| | ||||| | || | ||| |||||| Sbjct 843801 CTTCTGGTGGATGTGACTCCCTTGTCGCTGGGAATTGAAACCGCCGGCGGAGTGATGACT 843860 >seq4644 Length=1132839 Score = 125 bits (138), Expect = 2e-23 Identities = 154/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || ||||| || || || || || || || | || || || ||||| | Sbjct 752286 CAAG-TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCTTCCA 752228 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||| ||||| | ||| |||||||| ||||| ||||| || || ||||| | Sbjct 752227 GCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGA 752168 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| ||||| | || ||||| || || || | || | ||||||| Sbjct 752167 TCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTCTTTC 752108 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||| || || || || || ||||||||| Sbjct 752107 CGGTAAGAGTCTTCACGAAGATCTGCATT 752079 Score = 123 bits (136), Expect = 8e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || | ||| || || ||||| || || || || || || || | || || || || Sbjct 752519 AGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCC 752460 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || || ||||| | ||| |||||||| ||||| ||||| || || ||| Sbjct 752459 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCC 752400 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | || ||||| || || || | || | ||| Sbjct 752399 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTC 752340 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||||||| || || || ||||| ||||||||| Sbjct 752339 TTTCCGGTCAGGGTCTTCACAAAGATCTGCATT 752307 >seq4837 Length=1611981 Score = 120 bits (132), Expect = 9e-22 Identities = 246/364 (68%), Gaps = 5/364 (1%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| ||||| || | |||||| | | || |||||||| | ||||| || ||| | Sbjct 528979 CCCGAGGAAATCTCCGCCATGGTTCTCGGCAAGATGAAGGAGACCGCTGAGGCCTATCTG 528920 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | | || || |||||||| | ||||| || ||||| || || |||||||||||| Sbjct 528919 GGCAAGAAGGTTACCCATGCTGTTGTCACTGTCCCGGCCTACTTCAACGATGCCCAGCGT 528860 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || ||||| || | |||| | | || || || ||| Sbjct 528859 CAGGCGACCAAGGATGCCGGTGTGATTGCTGGTCTCCATGTGATGCGCATCATCAACGAA 528800 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAA-AATGAGTGACCAAGaaaaaaaTAT 349770 || |||||||| || ||||| || || || || || || ||| | || || ||| | Sbjct 528799 CCGACTGCTGCGGCTATTGCCTACGGTCTGGACAAGAAGGAGGG----CGAGAAGAATGT 528744 Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830 || | || ||| | ||||| ||||| || ||||| || || || || |||| | || Sbjct 528743 GCTGGTGTTCGATCTGGGTGGCGGTACCTTCGATGTCTCCCTGCTGACCATTGATAACGG 528684 Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890 | || || || || || |||||||| ||| | || || || || || ||| | Sbjct 528683 TGTGTTCGAGGTGGTGGCCACCAACGGTGATACCCATTTGGGCGGTGAGGACTTCGATCA 528624 Query 349891 TCGT 349894 ||| Sbjct 528623 GCGT 528620 >seq4903 Length=2073822 Score = 100 bits (110), Expect = 9e-16 Identities = 185/267 (69%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 378183 ATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGT 378242 |||||| | ||||||| || | || || || || ||||| |||||||||||| Sbjct 76475 ATCATAGTTCACCATTACCGACTCCATGGCCTTGATGAGACGTCGCTGAATATAACCAGT 76534 Query 378243 TT-GACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGA 378301 || | || || ||||| || |||||||| | ||| ||||||| ||||| |||||||| Sbjct 76535 TTCGGCT-GTCTTAACGGCGGTATCAATAAGACCCTCACGACCTCCCATGGCATGGAAAT 76593 Query 378302 ATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTG 378361 | || |||| || || | || | | | | ||| |||| | ||| || | ||| || Sbjct 76594 AGAACTCAGAGGGTGTCAAACCGGCCAGATAGGAATTCTCCACAAAACCAC--GCGACTC 76651 Query 378362 GCGA--ATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAAT 378419 | || || ||||| || | |||| || ||||| || || || ||||| || || Sbjct 76652 GGGACCATAATCATCCTTGATGAAATGCGGCAATGTGCGCTTACGGAATCCATAGGGTAT 76711 Query 378420 TCGTTTTCCATCAACATTCTGTTGACC 378446 ||||| || || |||||||| || || Sbjct 76712 ACGTTTACCCTCCACATTCTGCTGGCC 76738 >seq4198 Length=487851 Score = 100 bits (110), Expect = 9e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||||||||| |||||| | ||| | ||||||| ||| || | |||||||| || Sbjct 465853 AAGATGAAGGAAACGGCTGAATCCTATCTGGGTGAAAAAGTTTCTCAGGCTGTTATCACG 465912 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || || ||||| |||||||||||| || || || ||||| || | ||||| Sbjct 465913 GTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCCACCAAGGATGCAGGTAAGATTGCT 465972 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | | || || | || || || |||||||| || || || | || || ||||| Sbjct 465973 GGCCTTGAAGTGCTGCGTATCATCAACGAACCCACAGCGGCTGCTCTGGCTTACGGGCTG 466032 Query 349742 GATAA 349746 || || Sbjct 466033 GAAAA 466037 >seq4754 Length=2324671 Score = 89.7 bits (98), Expect = 2e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 235889 GGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAA 235948 ||||||||||| ||| ||||||| ||||||||| ||||| ||||||||| |||||| | Sbjct 1046605 GGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACGGGGATCGAT 1046664 Query 235949 ACCCAGCATCTCCA 235962 |||| ||||||||| Sbjct 1046665 ACCCCGCATCTCCA 1046678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515154591613223