Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 268 1e-66
seq4678 104 3e-17
>seq4765
Length=3541379
Score = 268 bits (296), Expect = 1e-66
Identities = 951/1467 (65%), Gaps = 57/1467 (4%)
Strand=Plus/Minus
Query 78475 AGATCCCGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGG 78534
|||||||| | ||||| |||| | || ||| ||||||| || |||||
Sbjct 3010473 AGATCCCGCAATAGGTGATGGTTGACCACCTGGAATTCGCCGGAGAGAACGCGGCGTGTA 3010414
Query 78535 TAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAG 78594
||||| || || |||||||||||||| | |||||||| ||||| |||||||| || ||
Sbjct 3010413 TAGATATTCGTGGTGTACGGCTCGAAGGATTCGTTGTTGCCCATTATCTGGGCAGTGGAT 3010354
Query 78595 GCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACC 78654
|| || |||||||| || || || ||||| || | || || || |||||||| ||
Sbjct 3010353 GCCGTGGGCATGGGGGCCACGAGCAGAGAGTTTCTAACGCCGTGTTTCTTGATCGATTCC 3010294
Query 78655 TTTAG----GCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGG 78708
|| || ||| |||||| | | | | | | |||||||||| || |||
Sbjct 3010293 TTCAGCTTTGCCCAGTCCCAGAGGTTCGTGGGTACCTTGTCCCACATGTCGTACTGGAGG 3010234
Query 78709 ATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGT 78768
|| |||| | | | || |||| | | || || || | || || ||| ||| |||
Sbjct 3010233 ATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCATACGGGCCTTCGACCTGGGCCAGT 3010174
Query 78769 TCGCATGACTCGAG--CAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTG-TTGAGC 78825
|| || ||| | |||||| | | || | | || ||||| | ||| || ||
Sbjct 3010173 TCACA--ACTGGCTTCCAGGGCTCCATAATATATCGTTTCAAAGAT-CTGTTGATTCAGG 3010117
Query 78826 TCGCGCGCCTTGGTCTCG---TCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGG 78882
| ||||| |||| ||| | | | | | || || ||| ||||||| ||
Sbjct 3010116 AGACCCGCCTC---CTCGCTTTCGTAGGGGAATCTCATCAGAATCAAGGCATCGGCGAGT 3010060
Query 78883 CCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTC 78942
||||| ||||| || | || || || || | ||| || || | |||| || ||
Sbjct 3010059 CCCTGAACGCCAATGCCAATGGGGCGATGCCTCATATTCGATTTCCTGGCCTCC--GGCA 3010002
Query 78943 GGG--TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGAC---CCGAGTCA 78997
||| ||| |||| || || | |||||| || | || | || | || |
Sbjct 3010001 GGGGATAATAGTTGATGTCAATAATCTTGTTCAGATT---CTTGGCCACAGTCTTGGTGA 3009945
Query 78998 CCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTTGATGAAAGTCG-GTAGGCACAGC 79056
|||| | || || ||||| | ||| | | | | | || | | |||
Sbjct 3009944 CCTCCTTCAGCTTCTTAAAATCGTACGTCTTTTCGGGCGTCACAAACATGTTG--AGAGC 3009887
Query 79057 GATG----CCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAAC-CTCGATGATTTCTG 79111
|||| |||||||||| ||||| ||||||| |||| || | ||||| ||||||||
Sbjct 3009886 GATGGACGCCAGGTTGCAGACGGCGATCTCGTC-GGGCGAGGAGTACTCGACGATTTCTG 3009828
Query 79112 TGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGG 79171
|||||| ||| ||||||||||||| | |||| ||| ||||||||| ||| || |
Sbjct 3009827 TGCACAGATTGCTGCACTTGATGGTGCCCACATTCTGCTGATTGCTCTTCCTGTTGCACG 3009768
Query 79172 CGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCC 79231
| |||||| || ||||||||| | || ||||| ||||| || || | | || ||
Sbjct 3009767 CATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCACCTGCGCCTCGATGATGGCGAACC 3009708
Query 79232 AGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACA 79291
| | | | | ||| || | ||| | |||| || |||| | ||||||
Sbjct 3009707 ACAGGGACTGAGCCTTAACTGTCCGATTGGCCTTTCCCTCGGCCTCGTATTTAAGGTACA 3009648
Query 79292 ACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCA 79351
|| | || | || || | ||||| ||||||| || |||| |||||||||||| |
Sbjct 3009647 GCTTCTCAAACTCGTCGCCCCACACATCCTGCAGGCCGGGACACTTGTGCGGGCACATTA 3009588
Query 79352 GGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCG 79411
|| ||||| || | | ||| || || ||| ||||| || || ||||| |||||
Sbjct 3009587 GGGACCAGTTTTCATTCGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCAGAGGGCAT 3009528
Query 79412 TGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGT 79471
||| || ||||| ||| ||||||| | ||| |||| ||| || | || |
Sbjct 3009527 AGAATAGATCGCGAGCACGATTCTCCTCCTTGCCGGTGTTCTTTTTCAGTTCCAAGAACT 3009468
Query 79472 CCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGC 79531
| | || || | |||||| ||||||| ||||||||| || | ||| ||||||||||
Sbjct 3009467 CGAAGACATCCGAGTGCCAGGGCTCCAAATAGATGGCAAAGGCACCGGGCCGCTTGCCGC 3009408
Query 79532 CGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGT 79591
| ||||||| |||||||| ||| |||||||| ||||| |||||||| |||| ||| |
Sbjct 3009407 CACCCTGGTCCACGTACCGAGCCACATTGTTGAAGACTCGCAGCATGGGAACGAGGCCAT 3009348
Query 79592 CGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGG- 79650
|| | ||| || || || || || || | || || || ||| |||
Sbjct 3009347 TGGAGGTGCCATTTGTGCCACATATGGAAGTGCCCTTGGCACGGAT------GCAATGGA 3009294
Query 79651 -ATT----CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGT 79705
||| || ||||| || | | |||||||||| || || | | | || ||
Sbjct 3009293 CATTCAGGCCAATGCCGCCCGCCGACTTGGAGATCATGGCACAGTGTTCCACCGACTTAA 3009234
Query 79706 AGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGT 79765
| ||||| |||||||| || |||| | | ||||||||| ||| | ||| ||
Sbjct 3009233 AAATGCCTTCGATCGAATCCGATGTCATGGTCAGGAGGAAGCAGGACGAGAGCTGCGGCC 3009174
Query 79766 TGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCA 79825
|||||| | ||| ||| ||||| |||| ||||| |||||||| | || ||
Sbjct 3009173 GGTTCGTGGCAGCGGCGAACAGGGTGGGCGAGGCGTGTGTGAAGAAGCGCTCTGACAACA 3009114
Query 79826 GATCGTACGTCTCCTTGACGCGCGG----GAGGTCGTCGCCGTGGATGCCGACCGCGACG 79881
|| ||| |||||| || |||| || ||| || || ||||| || | ||| |||
Sbjct 3009113 AATTGTATGTCTCC---AC-AGCGGCATCGATGTCTTCACCATGGATTCCAATCGCCACG 3009058
Query 79882 CGCATGAAGAGGTACTGGGGCGTCTCG 79908
||||| | | || ||| ||| ||||
Sbjct 3009057 CGCATCAGCATGTGCTGCGGCCGCTCG 3009031
Score = 208 bits (230), Expect = 8e-49
Identities = 895/1400 (64%), Gaps = 55/1400 (4%)
Strand=Plus/Plus
Query 19102 GCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGT 19161
||| ||| || | | ||||| || ||| | || |||||||| || ||| || ||
Sbjct 3009037 GCCGCAGCACATGCTGATGCGCGTGGCGATTGGAATCCATGGTGAAGACATC----GATG 3009092
Query 19162 CCGC----GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCC 19217
|||| ||||||||| | || || || |||||||| ||||| |||| ||||
Sbjct 3009093 CCGCTGTGGAGACATACAATTTGTTGTCAGAGCGCTTCTTCACACACGCCTCGCCCACCC 3009152
Query 19218 TTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGG 19277
| ||| ||| | |||||| |||||| | ||| ||| ||||| || | ||||
Sbjct 3009153 TGTTCGCCGCTGCCACGAACCGGCCGCAGCTCTCGTCCTGCTTCCTCCTGACCATGACAT 3009212
Query 19278 ATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGT 19337
|| || || ||||| | || || | | | || || |||||||||| |
Sbjct 3009213 CGGATTCGATCGAAGGCATTTTTAAGTCGGTGGAACACTGTGCCATGATCTCCAAGTCGG 3009272
Query 19338 CCGGGGGTATCGG---GA---TCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCA 19391
| || || || || || |||| ||| ||||| | | || || ||
Sbjct 3009273 CGGGCGGCATTGGCCTGAATGTCCATTGC------ATCCGTGCCAAGGGCACTTCCATAT 3009326
Query 19392 ATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGG 19451
||| || || || || | || |||| || ||||| || ||||||||||| ||
Sbjct 3009327 GTGGCACAAATGGCACCTCCAATGGCCTCGTTCCCATGCTGCGAGTCTTCAACAATGTGG 3009386
Query 19452 CCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGC 19511
| ||||||| ||||||| |||||||| || || | || |||||||| | ||||
Sbjct 3009387 CTCGGTACGTGGACCAGGGTGGCGGCAAGCGGCCCGGTGCCTTTGCCATCTATTTGGAGC 3009446
Query 19512 CATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGA 19571
| |||||| |||| ||| | || ||| | |||||| |||| || | |||||||
Sbjct 3009447 CCTGGCACTCGGATGTCTTCGAGTTCTTGGAACTGAAAAAGAACACCGGCAAGGAGGAGA 3009506
Query 19572 TGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTG 19631
|| |||||| || ||| ||| | ||||| || || || || ||| || || |
Sbjct 3009507 ATCGTGCTCGCGATCTATTCTATGCCCTCTGGATACCCGATCTCTTTATGAAGCGCGTCG 3009566
Query 19632 AGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCT 19691
|| | | ||| | ||| ||| |||||||||||| | || || ||||| | || || |
Sbjct 3009567 AGGCGAATGAAAACTGGTCCCTAATGTGCCCGCACAAGTGTCCCGGCCTGCAGGATGTGT 3009626
Query 19692 ACGGCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGG 19751
||||| | ||| | || |||||| | |||| ||| |||| | ||| |
Sbjct 3009627 GGGGCGACGAGTTTGAGAAGCTGTACCTTAAATACGAGGCCGAGGGAAAGGCCAATCGGA 3009686
Query 19752 TGGTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACAC 19811
|| ||| | | | | ||| | | || || | ||||| ||||| |||| |
Sbjct 3009687 CAGTTAAGGCTCAGTCCCTGTGGTTCGCCATCATCGAGGCGCAGGTGGAGACTGGCAATC 3009746
Query 19812 CGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGA 19871
|||||||| || |||||| || ||| ||| |||||| |||| | ||| | |
Sbjct 3009747 CGTACATGCTCTTCAAGGATGCGTGCAACAGGAAGAGCAATCAGCAGAATGTGGGCACCA 3009806
Query 19872 TCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCG 19931
|||||| ||| ||||| || |||||| | ||| ||| ||| ||||||| ||||
Sbjct 3009807 TCAAGTGCAGCAATCTGTGCACAGAAATCGTCGAGTACTCCTCGCCCGACGAGATCGCCG 3009866
Query 19932 TGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCC---TCCTCCTTCGACT 19988
| || || ||||||||| | || | || || | | || | | ||| |
Sbjct 3009867 TCTGCAACCTGGCGTCCATCGCTCTCAACATGTTTGTGACGCCCGAAAAGACGTACGATT 3009926
Query 19989 TTGCCAAATTGTACGAGGTGACCCGG---GTCGTCACGCGTAATCTGAATCGCGTCATCG 20045
|| || || | ||||| ||| | || | || | |||||||| | || |
Sbjct 3009927 TTAAGAAGCTGAAGGAGGTCACCAAGACTGTGGCCAAG---AATCTGAACAAGATTATTG 3009983
Query 20046 ATCGGAACTTTTA--CCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGAT 20103
| |||| ||| ||| || || ||| | || ||||||||| | || || || ||
Sbjct 3009984 ACATCAACTATTATCCCCTGCC--GGAGGCCAGGAAATCGAATATGAGGCATCGCCCCAT 3010041
Query 20104 CGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGA 20163
| || ||||| ||||| || ||||| | || || || | | || | | ||| |
Sbjct 3010042 TGGCATTGGCGTTCAGGGACTCGCCGATGCCTTGATTCTGATGAGATTCCCCTACGA--A 3010099
Query 20164 TCCCA--AGGCGCGCGAGCTCAA-CAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCT 20220
| | ||||| | || || ||| | ||||| || | | || | | ||
Sbjct 3010100 AGCGAGGAGGCGGGTCTCCTGAATCAACAG-ATCTTTGAAACGATATATTATGGAGC--- 3010155
Query 20221 CCTGGAATC---GTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTC 20277
||||||| | || ||||| ||| | | || |||||||| || || | | ||||
Sbjct 3010156 CCTGGAAGCCAGTTGTGAACTGGCCCAGGTCGAAGGCCCGTATGAAACCTACGAGGGCAG 3010215
Query 20278 GCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGC---GTCACTGAGAATGAGTT 20334
|||| | | |||| ||||||||| |||||||||| | || | ||| |
Sbjct 3010216 CCCCGTGAGCAAGGGAATCCTCCAGTACGACATGTGGGACAAGGTACCCACGAA--CCTC 3010273
Query 20335 TTGGA--GCGC---CCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTC 20389
| ||| | || || |||| |||||||| ||||| || | ||||| |||||
Sbjct 3010274 TGGGACTGGGCAAAGCTGAAGGAATCGATCAAGAAACACGGCGTTAGAAACTCTCTGCTC 3010333
Query 20390 GTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAG 20449
|| || |||||||| || || || || |||||||| ||||| |||||||| | ||||||
Sbjct 3010334 GTGGCCCCCATGCCCACGGCATCCACTGCCCAGATAATGGGCAACAACGAATCCTTCGAG 3010393
Query 20450 CCGTACACGACCAACATCTA 20469
|||||||| || || |||||
Sbjct 3010394 CCGTACACCACGAATATCTA 3010413
>seq4678
Length=1229792
Score = 104 bits (114), Expect = 3e-17
Identities = 300/456 (66%), Gaps = 13/456 (3%)
Strand=Plus/Minus
Query 59986 TCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCT 60045
|||| || ||||| ||| || || || |||||| ||| || | |||||||
Sbjct 1146555 TCATTGCGTTTGCCGCCGTCGAGGGCATTTTCTTCAGCGGCAGCTTTGCCTCCATTTTCT 1146496
Query 60046 GGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGG 60105
|||| || ||||| ||||| ||||| || ||| |||||||| |||||||| ||||| |
Sbjct 1146495 GGCTGAAGAAGCGCGGCCTGATGCCTGGTTTGACCTTCTCCAATGAGCTGATCTCCCGCG 1146436
Query 60106 ACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCA-CACCTATTG----GAAAA 60160
| ||||| || || || ||||| ||| | | | | || || || || ||
Sbjct 1146435 ATGAGGGTCTGCACTGTGACTTTGCGGTGCTGATGT-TCCAGCATCTGGTGCAGCGACCG 1146377
Query 60161 ATGCCCTTCCAAGGATATTCACAAGATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGTT 60220
| || | | | || || |||| | | ||| || | ||| |||||
Sbjct 1146376 AGGCGCGAGC--GCATCATCG--AGATCATCCGCGACGCTGTGGACATTGAGCAGGAGTT 1146321
Query 60221 CATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTA 60280
| |||| || || || || || || || || ||| || || ||| |||||||
Sbjct 1146320 CCTCACCGATGCCCTGCCGGTTAATCTGATCGGCATGAACTGTGACCTGATGTCGCAGTA 1146261
Query 60281 CATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGT 60340
|||| ||||||| || || || || ||| | || | || | ||| || ||| |
Sbjct 1146260 CATTGAGTTTGTGGCCGATCGTCTGCTGGTCGAGCTGGGCGTGGGAAAGATCTACAACAC 1146201
Query 60341 GAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGA 60400
|| || || ||| ||| ||||||| |||||| |||| || |||||||||||||||||
Sbjct 1146200 CAAGAATCCGTTCAACTTCATGGAGATGATCTCGCTGGATGGCAAGACCAACTTCTTTGA 1146141
Query 60401 GAAGCGGGTCGGGGATTATTCAAAGCACATGGTCGT 60436
|||| ||| || || ||| ||| ||||| |||
Sbjct 1146140 GAAGAAGGTGGGCGAGTAT---CAGCGCATGGGCGT 1146108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548489550425040
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