Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4765 268 1e-66 seq4678 104 3e-17 >seq4765 Length=3541379 Score = 268 bits (296), Expect = 1e-66 Identities = 951/1467 (65%), Gaps = 57/1467 (4%) Strand=Plus/Minus Query 78475 AGATCCCGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGG 78534 |||||||| | ||||| |||| | || ||| ||||||| || ||||| Sbjct 3010473 AGATCCCGCAATAGGTGATGGTTGACCACCTGGAATTCGCCGGAGAGAACGCGGCGTGTA 3010414 Query 78535 TAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAG 78594 ||||| || || |||||||||||||| | |||||||| ||||| |||||||| || || Sbjct 3010413 TAGATATTCGTGGTGTACGGCTCGAAGGATTCGTTGTTGCCCATTATCTGGGCAGTGGAT 3010354 Query 78595 GCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACC 78654 || || |||||||| || || || ||||| || | || || || |||||||| || Sbjct 3010353 GCCGTGGGCATGGGGGCCACGAGCAGAGAGTTTCTAACGCCGTGTTTCTTGATCGATTCC 3010294 Query 78655 TTTAG----GCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGG 78708 || || ||| |||||| | | | | | | |||||||||| || ||| Sbjct 3010293 TTCAGCTTTGCCCAGTCCCAGAGGTTCGTGGGTACCTTGTCCCACATGTCGTACTGGAGG 3010234 Query 78709 ATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGT 78768 || |||| | | | || |||| | | || || || | || || ||| ||| ||| Sbjct 3010233 ATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCATACGGGCCTTCGACCTGGGCCAGT 3010174 Query 78769 TCGCATGACTCGAG--CAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTG-TTGAGC 78825 || || ||| | |||||| | | || | | || ||||| | ||| || || Sbjct 3010173 TCACA--ACTGGCTTCCAGGGCTCCATAATATATCGTTTCAAAGAT-CTGTTGATTCAGG 3010117 Query 78826 TCGCGCGCCTTGGTCTCG---TCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGG 78882 | ||||| |||| ||| | | | | | || || ||| ||||||| || Sbjct 3010116 AGACCCGCCTC---CTCGCTTTCGTAGGGGAATCTCATCAGAATCAAGGCATCGGCGAGT 3010060 Query 78883 CCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTC 78942 ||||| ||||| || | || || || || | ||| || || | |||| || || Sbjct 3010059 CCCTGAACGCCAATGCCAATGGGGCGATGCCTCATATTCGATTTCCTGGCCTCC--GGCA 3010002 Query 78943 GGG--TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGAC---CCGAGTCA 78997 ||| ||| |||| || || | |||||| || | || | || | || | Sbjct 3010001 GGGGATAATAGTTGATGTCAATAATCTTGTTCAGATT---CTTGGCCACAGTCTTGGTGA 3009945 Query 78998 CCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTTGATGAAAGTCG-GTAGGCACAGC 79056 |||| | || || ||||| | ||| | | | | | || | | ||| Sbjct 3009944 CCTCCTTCAGCTTCTTAAAATCGTACGTCTTTTCGGGCGTCACAAACATGTTG--AGAGC 3009887 Query 79057 GATG----CCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAAC-CTCGATGATTTCTG 79111 |||| |||||||||| ||||| ||||||| |||| || | ||||| |||||||| Sbjct 3009886 GATGGACGCCAGGTTGCAGACGGCGATCTCGTC-GGGCGAGGAGTACTCGACGATTTCTG 3009828 Query 79112 TGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGG 79171 |||||| ||| ||||||||||||| | |||| ||| ||||||||| ||| || | Sbjct 3009827 TGCACAGATTGCTGCACTTGATGGTGCCCACATTCTGCTGATTGCTCTTCCTGTTGCACG 3009768 Query 79172 CGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCC 79231 | |||||| || ||||||||| | || ||||| ||||| || || | | || || Sbjct 3009767 CATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCACCTGCGCCTCGATGATGGCGAACC 3009708 Query 79232 AGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACA 79291 | | | | | ||| || | ||| | |||| || |||| | |||||| Sbjct 3009707 ACAGGGACTGAGCCTTAACTGTCCGATTGGCCTTTCCCTCGGCCTCGTATTTAAGGTACA 3009648 Query 79292 ACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCA 79351 || | || | || || | ||||| ||||||| || |||| |||||||||||| | Sbjct 3009647 GCTTCTCAAACTCGTCGCCCCACACATCCTGCAGGCCGGGACACTTGTGCGGGCACATTA 3009588 Query 79352 GGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCG 79411 || ||||| || | | ||| || || ||| ||||| || || ||||| ||||| Sbjct 3009587 GGGACCAGTTTTCATTCGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCAGAGGGCAT 3009528 Query 79412 TGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGT 79471 ||| || ||||| ||| ||||||| | ||| |||| ||| || | || | Sbjct 3009527 AGAATAGATCGCGAGCACGATTCTCCTCCTTGCCGGTGTTCTTTTTCAGTTCCAAGAACT 3009468 Query 79472 CCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGC 79531 | | || || | |||||| ||||||| ||||||||| || | ||| |||||||||| Sbjct 3009467 CGAAGACATCCGAGTGCCAGGGCTCCAAATAGATGGCAAAGGCACCGGGCCGCTTGCCGC 3009408 Query 79532 CGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGT 79591 | ||||||| |||||||| ||| |||||||| ||||| |||||||| |||| ||| | Sbjct 3009407 CACCCTGGTCCACGTACCGAGCCACATTGTTGAAGACTCGCAGCATGGGAACGAGGCCAT 3009348 Query 79592 CGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGG- 79650 || | ||| || || || || || || | || || || ||| ||| Sbjct 3009347 TGGAGGTGCCATTTGTGCCACATATGGAAGTGCCCTTGGCACGGAT------GCAATGGA 3009294 Query 79651 -ATT----CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGT 79705 ||| || ||||| || | | |||||||||| || || | | | || || Sbjct 3009293 CATTCAGGCCAATGCCGCCCGCCGACTTGGAGATCATGGCACAGTGTTCCACCGACTTAA 3009234 Query 79706 AGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGT 79765 | ||||| |||||||| || |||| | | ||||||||| ||| | ||| || Sbjct 3009233 AAATGCCTTCGATCGAATCCGATGTCATGGTCAGGAGGAAGCAGGACGAGAGCTGCGGCC 3009174 Query 79766 TGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCA 79825 |||||| | ||| ||| ||||| |||| ||||| |||||||| | || || Sbjct 3009173 GGTTCGTGGCAGCGGCGAACAGGGTGGGCGAGGCGTGTGTGAAGAAGCGCTCTGACAACA 3009114 Query 79826 GATCGTACGTCTCCTTGACGCGCGG----GAGGTCGTCGCCGTGGATGCCGACCGCGACG 79881 || ||| |||||| || |||| || ||| || || ||||| || | ||| ||| Sbjct 3009113 AATTGTATGTCTCC---AC-AGCGGCATCGATGTCTTCACCATGGATTCCAATCGCCACG 3009058 Query 79882 CGCATGAAGAGGTACTGGGGCGTCTCG 79908 ||||| | | || ||| ||| |||| Sbjct 3009057 CGCATCAGCATGTGCTGCGGCCGCTCG 3009031 Score = 208 bits (230), Expect = 8e-49 Identities = 895/1400 (64%), Gaps = 55/1400 (4%) Strand=Plus/Plus Query 19102 GCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGT 19161 ||| ||| || | | ||||| || ||| | || |||||||| || ||| || || Sbjct 3009037 GCCGCAGCACATGCTGATGCGCGTGGCGATTGGAATCCATGGTGAAGACATC----GATG 3009092 Query 19162 CCGC----GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCC 19217 |||| ||||||||| | || || || |||||||| ||||| |||| |||| Sbjct 3009093 CCGCTGTGGAGACATACAATTTGTTGTCAGAGCGCTTCTTCACACACGCCTCGCCCACCC 3009152 Query 19218 TTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGG 19277 | ||| ||| | |||||| |||||| | ||| ||| ||||| || | |||| Sbjct 3009153 TGTTCGCCGCTGCCACGAACCGGCCGCAGCTCTCGTCCTGCTTCCTCCTGACCATGACAT 3009212 Query 19278 ATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGT 19337 || || || ||||| | || || | | | || || |||||||||| | Sbjct 3009213 CGGATTCGATCGAAGGCATTTTTAAGTCGGTGGAACACTGTGCCATGATCTCCAAGTCGG 3009272 Query 19338 CCGGGGGTATCGG---GA---TCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCA 19391 | || || || || || |||| ||| ||||| | | || || || Sbjct 3009273 CGGGCGGCATTGGCCTGAATGTCCATTGC------ATCCGTGCCAAGGGCACTTCCATAT 3009326 Query 19392 ATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGG 19451 ||| || || || || | || |||| || ||||| || ||||||||||| || Sbjct 3009327 GTGGCACAAATGGCACCTCCAATGGCCTCGTTCCCATGCTGCGAGTCTTCAACAATGTGG 3009386 Query 19452 CCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGC 19511 | ||||||| ||||||| |||||||| || || | || |||||||| | |||| Sbjct 3009387 CTCGGTACGTGGACCAGGGTGGCGGCAAGCGGCCCGGTGCCTTTGCCATCTATTTGGAGC 3009446 Query 19512 CATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGA 19571 | |||||| |||| ||| | || ||| | |||||| |||| || | ||||||| Sbjct 3009447 CCTGGCACTCGGATGTCTTCGAGTTCTTGGAACTGAAAAAGAACACCGGCAAGGAGGAGA 3009506 Query 19572 TGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTG 19631 || |||||| || ||| ||| | ||||| || || || || ||| || || | Sbjct 3009507 ATCGTGCTCGCGATCTATTCTATGCCCTCTGGATACCCGATCTCTTTATGAAGCGCGTCG 3009566 Query 19632 AGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCT 19691 || | | ||| | ||| ||| |||||||||||| | || || ||||| | || || | Sbjct 3009567 AGGCGAATGAAAACTGGTCCCTAATGTGCCCGCACAAGTGTCCCGGCCTGCAGGATGTGT 3009626 Query 19692 ACGGCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGG 19751 ||||| | ||| | || |||||| | |||| ||| |||| | ||| | Sbjct 3009627 GGGGCGACGAGTTTGAGAAGCTGTACCTTAAATACGAGGCCGAGGGAAAGGCCAATCGGA 3009686 Query 19752 TGGTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACAC 19811 || ||| | | | | ||| | | || || | ||||| ||||| |||| | Sbjct 3009687 CAGTTAAGGCTCAGTCCCTGTGGTTCGCCATCATCGAGGCGCAGGTGGAGACTGGCAATC 3009746 Query 19812 CGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGA 19871 |||||||| || |||||| || ||| ||| |||||| |||| | ||| | | Sbjct 3009747 CGTACATGCTCTTCAAGGATGCGTGCAACAGGAAGAGCAATCAGCAGAATGTGGGCACCA 3009806 Query 19872 TCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCG 19931 |||||| ||| ||||| || |||||| | ||| ||| ||| ||||||| |||| Sbjct 3009807 TCAAGTGCAGCAATCTGTGCACAGAAATCGTCGAGTACTCCTCGCCCGACGAGATCGCCG 3009866 Query 19932 TGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCC---TCCTCCTTCGACT 19988 | || || ||||||||| | || | || || | | || | | ||| | Sbjct 3009867 TCTGCAACCTGGCGTCCATCGCTCTCAACATGTTTGTGACGCCCGAAAAGACGTACGATT 3009926 Query 19989 TTGCCAAATTGTACGAGGTGACCCGG---GTCGTCACGCGTAATCTGAATCGCGTCATCG 20045 || || || | ||||| ||| | || | || | |||||||| | || | Sbjct 3009927 TTAAGAAGCTGAAGGAGGTCACCAAGACTGTGGCCAAG---AATCTGAACAAGATTATTG 3009983 Query 20046 ATCGGAACTTTTA--CCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGAT 20103 | |||| ||| ||| || || ||| | || ||||||||| | || || || || Sbjct 3009984 ACATCAACTATTATCCCCTGCC--GGAGGCCAGGAAATCGAATATGAGGCATCGCCCCAT 3010041 Query 20104 CGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGA 20163 | || ||||| ||||| || ||||| | || || || | | || | | ||| | Sbjct 3010042 TGGCATTGGCGTTCAGGGACTCGCCGATGCCTTGATTCTGATGAGATTCCCCTACGA--A 3010099 Query 20164 TCCCA--AGGCGCGCGAGCTCAA-CAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCT 20220 | | ||||| | || || ||| | ||||| || | | || | | || Sbjct 3010100 AGCGAGGAGGCGGGTCTCCTGAATCAACAG-ATCTTTGAAACGATATATTATGGAGC--- 3010155 Query 20221 CCTGGAATC---GTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTC 20277 ||||||| | || ||||| ||| | | || |||||||| || || | | |||| Sbjct 3010156 CCTGGAAGCCAGTTGTGAACTGGCCCAGGTCGAAGGCCCGTATGAAACCTACGAGGGCAG 3010215 Query 20278 GCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGC---GTCACTGAGAATGAGTT 20334 |||| | | |||| ||||||||| |||||||||| | || | ||| | Sbjct 3010216 CCCCGTGAGCAAGGGAATCCTCCAGTACGACATGTGGGACAAGGTACCCACGAA--CCTC 3010273 Query 20335 TTGGA--GCGC---CCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTC 20389 | ||| | || || |||| |||||||| ||||| || | ||||| ||||| Sbjct 3010274 TGGGACTGGGCAAAGCTGAAGGAATCGATCAAGAAACACGGCGTTAGAAACTCTCTGCTC 3010333 Query 20390 GTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAG 20449 || || |||||||| || || || || |||||||| ||||| |||||||| | |||||| Sbjct 3010334 GTGGCCCCCATGCCCACGGCATCCACTGCCCAGATAATGGGCAACAACGAATCCTTCGAG 3010393 Query 20450 CCGTACACGACCAACATCTA 20469 |||||||| || || ||||| Sbjct 3010394 CCGTACACCACGAATATCTA 3010413 >seq4678 Length=1229792 Score = 104 bits (114), Expect = 3e-17 Identities = 300/456 (66%), Gaps = 13/456 (3%) Strand=Plus/Minus Query 59986 TCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCT 60045 |||| || ||||| ||| || || || |||||| ||| || | ||||||| Sbjct 1146555 TCATTGCGTTTGCCGCCGTCGAGGGCATTTTCTTCAGCGGCAGCTTTGCCTCCATTTTCT 1146496 Query 60046 GGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGG 60105 |||| || ||||| ||||| ||||| || ||| |||||||| |||||||| ||||| | Sbjct 1146495 GGCTGAAGAAGCGCGGCCTGATGCCTGGTTTGACCTTCTCCAATGAGCTGATCTCCCGCG 1146436 Query 60106 ACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCA-CACCTATTG----GAAAA 60160 | ||||| || || || ||||| ||| | | | | || || || || || Sbjct 1146435 ATGAGGGTCTGCACTGTGACTTTGCGGTGCTGATGT-TCCAGCATCTGGTGCAGCGACCG 1146377 Query 60161 ATGCCCTTCCAAGGATATTCACAAGATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGTT 60220 | || | | | || || |||| | | ||| || | ||| ||||| Sbjct 1146376 AGGCGCGAGC--GCATCATCG--AGATCATCCGCGACGCTGTGGACATTGAGCAGGAGTT 1146321 Query 60221 CATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTA 60280 | |||| || || || || || || || || ||| || || ||| ||||||| Sbjct 1146320 CCTCACCGATGCCCTGCCGGTTAATCTGATCGGCATGAACTGTGACCTGATGTCGCAGTA 1146261 Query 60281 CATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGT 60340 |||| ||||||| || || || || ||| | || | || | ||| || ||| | Sbjct 1146260 CATTGAGTTTGTGGCCGATCGTCTGCTGGTCGAGCTGGGCGTGGGAAAGATCTACAACAC 1146201 Query 60341 GAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGA 60400 || || || ||| ||| ||||||| |||||| |||| || ||||||||||||||||| Sbjct 1146200 CAAGAATCCGTTCAACTTCATGGAGATGATCTCGCTGGATGGCAAGACCAACTTCTTTGA 1146141 Query 60401 GAAGCGGGTCGGGGATTATTCAAAGCACATGGTCGT 60436 |||| ||| || || ||| ||| ||||| ||| Sbjct 1146140 GAAGAAGGTGGGCGAGTAT---CAGCGCATGGGCGT 1146108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548489550425040