Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4765 197 2e-45 seq4976 159 4e-34 seq4774 156 5e-33 seq4678 105 7e-18 >seq4765 Length=3541379 Score = 197 bits (218), Expect = 2e-45 Identities = 463/697 (66%), Gaps = 14/697 (2%) Strand=Plus/Plus Query 53272 CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAG 53331 ||| || |||||| |||| ||||||||| ||||| ||||| | || ||| | ||| Sbjct 3009130 CTTCACACACGCCTCGCCCACCCTGTTCGCCGCTGCCACGAACCGGCCGCAGCTCTCGTC 3009189 Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391 ||||||||| || | |||| || |||||||| ||||| | || || | | | Sbjct 3009190 CTGCTTCCTCCTGACCATGACATCGGATTCGATCGAAGGCATTTTTAAGTCGGTGGAACA 3009249 Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG------TATCCACTGCTCGAACGT 53445 |||||| |||||||||| | |||| || || || | |||| ||| | Sbjct 3009250 CTGTGCCATGATCTCCAAGTCGGCGGGCGGCATTGGCCTGAATGTCCATTGCA------T 3009303 Query 53446 CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTAT 53505 |||||| || ||||| | || || || || ||| | || |||| |||| || || Sbjct 3009304 CCGTGCCAAGGGCACTTCCATATGTGGCACAAATGGCACCTCCAATGGCCTCGTTCCCAT 3009363 Query 53506 GCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGG 53565 ||| || ||||||||||| ||| |||||||| |||||||||| || ||||| || Sbjct 3009364 GCTGCGAGTCTTCAACAATGTGGCTCGGTACGTGGACCAGGGTGGCGGCAAGCGGCCCGG 3009423 Query 53566 GTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCG 53625 | || |||||||| | ||||| |||||| | || | | ||||| | || ||| Sbjct 3009424 TGCCTTTGCCATCTATTTGGAGCCCTGGCACTCGGATGTCTTCGAGTTCTTGGAACTGAA 3009483 Query 53626 TCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTC 53684 ||| || | || |||| || ||| || || || || || || ||||| | Sbjct 3009484 AAAGAACACCGGCAAGGAGGAGAATCG-TGCTCGCGATCTATTCTATGCCCTCTGGATAC 3009542 Query 53685 CGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACG 53744 | || ||||| ||| | || ||| | | || | |||| ||| ||||||||| || Sbjct 3009543 CCGATCTCTTTATGAAGCGCGTCGAGGCGAATGAAAACTGGTCCCTAATGTGCCCGCACA 3009602 Query 53745 AGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACG 53804 |||| |||||||| |||| ||| | || || |||||| | || |||| | | |||| Sbjct 3009603 AGTGTCCCGGCCTGCAGGATGTGTGGGGCGACGAGTTTGAGAAGCTGTACCTTAAATACG 3009662 Query 53805 CAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCA 53864 | |||| ||| || || ||||| | | ||| || ||| || Sbjct 3009663 AGGCCGAGGGAAAGGCCAATCGGACAGTTAAGGCTCAGTCCCTGTGGTTCGCCATCATCG 3009722 Query 53865 AGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGA 53924 || ||||||||||| || | ||||||||| || ||||||| || |||| ||||| Sbjct 3009723 AGGCGCAGGTGGAGACTGGCAATCCGTACATGCTCTTCAAGGATGCGTGCAACAGGAAGA 3009782 Query 53925 GCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAA 53961 |||| ||| |||| | ||| |||||| | ||||| Sbjct 3009783 GCAATCAGCAGAATGTGGGCACCATCAAGTGCAGCAA 3009819 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 55487 AACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAAC 55546 ||||| ||||||||||| || ||||| || || || || || ||||| |||||||||||| Sbjct 3010322 AACTCTCTGCTCGTGGCCCCCATGCCCACGGCATCCACTGCCCAGATAATGGGCAACAAC 3010381 Query 55547 GAGGCGTTCGAGCCGTACACGACCAACATCTA 55578 || | |||||||||||||| || || ||||| Sbjct 3010382 GAATCCTTCGAGCCGTACACCACGAATATCTA 3010413 >seq4976 Length=1852182 Score = 159 bits (176), Expect = 4e-34 Identities = 195/266 (73%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||| || | ||||||||| || | | ||| |||||||| || Sbjct 1074326 GTGAAAATGTAACGAGCGCTGGCCGAATCCTTGCCGCCGGTCAAACGGGTACCGAACTGA 1074385 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | ||||||| ||||| | |||||||| ||||||||||| || |||| || ||| Sbjct 1074386 CCCCGGGGCTCCAGAAGGTTTATGTTGTTGGATCCCACAAAGTTCTGGGCCAGATTCACA 1074445 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || ||||||| |||| || || ||||| |||| | ||| ||||| | || Sbjct 1074446 ATGGTCATTTGGAGGGAGACCTCGCCGTGATGATAGGCCGACATCTCGGCCACCGAACCG 1074505 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 | || || ||||| || | ||| | | |||| |||||| ||||| | | || ||| Sbjct 1074506 GAAAGTTGCGCCACTTTAACCTCTCGCTTATCGTTCCTCTTGAAGCAGGTAAACATAACC 1074565 Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570 || ||||| | |||||||| ||||| Sbjct 1074566 TTACGCTGGCCCGGCTTCAGGCCATC 1074591 >seq4774 Length=608034 Score = 156 bits (172), Expect = 5e-33 Identities = 194/266 (73%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||| || | ||||||||| || | | ||| |||||||| || Sbjct 452658 GTGAAAATGTAACGAGCGCTGGCCGAATCCTTGCCGCCGGTCAAACGGGTACCGAACTGA 452717 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | ||||||| ||||| | |||||||| |||||| |||| || |||| || ||| Sbjct 452718 CCCCGGGGCTCCAGAAGGTTTATGTTGTTGGATCCCACATAGTTCTGGGCCAGATTCACA 452777 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || ||||||| |||| || || ||||| |||| | ||| ||||| | || Sbjct 452778 ATGGTCATTTGGAGGGAGACCTCGCCGTGATGATAGGCCGACATCTCGGCCACCGAACCG 452837 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 | || || ||||| || | ||| | | |||| |||||| ||||| | | || ||| Sbjct 452838 GAAAGTTGCGCCACTTTAACCTCTCGCTTATCGTTCCTCTTGAAGCAGGTAAACATAACC 452897 Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570 || ||||| | |||||||| ||||| Sbjct 452898 TTACGCTGGCCCGGCTTCAGGCCATC 452923 >seq4678 Length=1229792 Score = 105 bits (116), Expect = 7e-18 Identities = 515/812 (63%), Gaps = 13/812 (2%) Strand=Plus/Plus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| || || ||| ||| ||||| ||||||||||| || |||| |||||| ||||||| Sbjct 1146122 ATACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCCAT 1146181 Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTT---CTCCCCAAACTGTGCCATGAG 74578 ||| ||| || ||||| | ||| || ||| | | || | || ||| || Sbjct 1146182 GAAGTTGAACGGATTCTTGGTGTTGTAGAT---CTTTCCCACGCCCAGCTCGACCAGCAG 1146238 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTT 74638 ||||| |||||||| | ||||||||||| ||| | | ||||||||| || || Sbjct 1146239 ACGATCGGCCACAAACTCAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATT 1146298 Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTT 74698 |||||| || ||||||| ||||| ||| | || ||| ||| |||| Sbjct 1146299 AACCGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTC 1146358 Query 74699 G-TGAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAAACT 74757 | ||| || | | | | | | ||| || | | | | ||| ||||| | Sbjct 1146359 GATGATGCGCTCGCGCCTCGGTCGCTGCAC-CAGATGCTGGAACATCAGCACCGCAAAGT 1146417 Query 74758 CCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAA 74817 | ||| || ||||| | | |||| ||||| || || | | |||||||| | Sbjct 1146418 CACAGTGCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCA 1146477 Query 74818 GTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGA 74877 | || |||||||||| ||| || |||| ||| || |||||||| ||||| |||| Sbjct 1146478 GGCCGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTCGA 1146537 Query 74878 CACACGCAAAGGCGACAAGGCGTTGCGCGAA---CGGTGCATCGGAAGTCATCCAAGTCT 74934 | ||||| || | | ||| | | | || | | | ||||| ||||| | | Sbjct 1146538 CGGCGGCAAACGCAATGATGCGCTCCCCAAAGTTGGCCGACTTGGAAGAGATCCAGGACA 1146597 Query 74935 GAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTG 74994 | ||||| ||||| || || || ||||| || | || || || || | ||| || | Sbjct 1146598 GGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATGGTCTCAATGGCATTGAACAGATATT 1146657 Query 74995 CCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAA 75054 || || | || ||| | | |||| |||| | |||| |||||||||| | Sbjct 1146658 CCCGCTGGTGTGGGTCCCGAATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATGCA 1146717 Query 75055 TCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCC 75113 ||| || ||| |||| | | || || | || ||||| | |||||||| ||| Sbjct 1146718 CGTTCTCCATG-GCGATCTGGAAGCCATAAAAGCAGCGGGCCTCGGTGATCTGTACCTCC 1146776 Query 75114 TTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCC 75173 | ||| | | | |||||| |||| || || || |||||||| || || ||| Sbjct 1146777 TGGCTAAAGCGCTCCACCAGATTCTCGTTGACAATACCATCGGAGGCGGCAAAGAAGGCC 1146836 Query 75174 AGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCC 75233 || || ||| |||||||| || || || | || | ||| || | || ||| Sbjct 1146837 AGCACATGGGAGATGAAGTGGCGTTCGTCATCCTTAAGGCGATGCCAGTCGGTGAGATCC 1146896 Query 75234 CCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 | ||| || | ||| || || |||||||| Sbjct 1146897 TTGGACAAGTCCACCTCTTCCACGGTCCAGAA 1146928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547180834531800