Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 197 2e-45
seq4976 159 4e-34
seq4774 156 5e-33
seq4678 105 7e-18
>seq4765
Length=3541379
Score = 197 bits (218), Expect = 2e-45
Identities = 463/697 (66%), Gaps = 14/697 (2%)
Strand=Plus/Plus
Query 53272 CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAG 53331
||| || |||||| |||| ||||||||| ||||| ||||| | || ||| | |||
Sbjct 3009130 CTTCACACACGCCTCGCCCACCCTGTTCGCCGCTGCCACGAACCGGCCGCAGCTCTCGTC 3009189
Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391
||||||||| || | |||| || |||||||| ||||| | || || | | |
Sbjct 3009190 CTGCTTCCTCCTGACCATGACATCGGATTCGATCGAAGGCATTTTTAAGTCGGTGGAACA 3009249
Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG------TATCCACTGCTCGAACGT 53445
|||||| |||||||||| | |||| || || || | |||| ||| |
Sbjct 3009250 CTGTGCCATGATCTCCAAGTCGGCGGGCGGCATTGGCCTGAATGTCCATTGCA------T 3009303
Query 53446 CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTAT 53505
|||||| || ||||| | || || || || ||| | || |||| |||| || ||
Sbjct 3009304 CCGTGCCAAGGGCACTTCCATATGTGGCACAAATGGCACCTCCAATGGCCTCGTTCCCAT 3009363
Query 53506 GCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGG 53565
||| || ||||||||||| ||| |||||||| |||||||||| || ||||| ||
Sbjct 3009364 GCTGCGAGTCTTCAACAATGTGGCTCGGTACGTGGACCAGGGTGGCGGCAAGCGGCCCGG 3009423
Query 53566 GTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCG 53625
| || |||||||| | ||||| |||||| | || | | ||||| | || |||
Sbjct 3009424 TGCCTTTGCCATCTATTTGGAGCCCTGGCACTCGGATGTCTTCGAGTTCTTGGAACTGAA 3009483
Query 53626 TCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTC 53684
||| || | || |||| || ||| || || || || || || ||||| |
Sbjct 3009484 AAAGAACACCGGCAAGGAGGAGAATCG-TGCTCGCGATCTATTCTATGCCCTCTGGATAC 3009542
Query 53685 CGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACG 53744
| || ||||| ||| | || ||| | | || | |||| ||| ||||||||| ||
Sbjct 3009543 CCGATCTCTTTATGAAGCGCGTCGAGGCGAATGAAAACTGGTCCCTAATGTGCCCGCACA 3009602
Query 53745 AGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACG 53804
|||| |||||||| |||| ||| | || || |||||| | || |||| | | ||||
Sbjct 3009603 AGTGTCCCGGCCTGCAGGATGTGTGGGGCGACGAGTTTGAGAAGCTGTACCTTAAATACG 3009662
Query 53805 CAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCA 53864
| |||| ||| || || ||||| | | ||| || ||| ||
Sbjct 3009663 AGGCCGAGGGAAAGGCCAATCGGACAGTTAAGGCTCAGTCCCTGTGGTTCGCCATCATCG 3009722
Query 53865 AGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGA 53924
|| ||||||||||| || | ||||||||| || ||||||| || |||| |||||
Sbjct 3009723 AGGCGCAGGTGGAGACTGGCAATCCGTACATGCTCTTCAAGGATGCGTGCAACAGGAAGA 3009782
Query 53925 GCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAA 53961
|||| ||| |||| | ||| |||||| | |||||
Sbjct 3009783 GCAATCAGCAGAATGTGGGCACCATCAAGTGCAGCAA 3009819
Score = 95.1 bits (104), Expect = 1e-14
Identities = 76/92 (83%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 55487 AACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAAC 55546
||||| ||||||||||| || ||||| || || || || || ||||| ||||||||||||
Sbjct 3010322 AACTCTCTGCTCGTGGCCCCCATGCCCACGGCATCCACTGCCCAGATAATGGGCAACAAC 3010381
Query 55547 GAGGCGTTCGAGCCGTACACGACCAACATCTA 55578
|| | |||||||||||||| || || |||||
Sbjct 3010382 GAATCCTTCGAGCCGTACACCACGAATATCTA 3010413
>seq4976
Length=1852182
Score = 159 bits (176), Expect = 4e-34
Identities = 195/266 (73%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||||||||||| ||| || | ||||||||| || | | ||| |||||||| ||
Sbjct 1074326 GTGAAAATGTAACGAGCGCTGGCCGAATCCTTGCCGCCGGTCAAACGGGTACCGAACTGA 1074385
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| | ||||||| ||||| | |||||||| ||||||||||| || |||| || |||
Sbjct 1074386 CCCCGGGGCTCCAGAAGGTTTATGTTGTTGGATCCCACAAAGTTCTGGGCCAGATTCACA 1074445
Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484
|| || ||||||| |||| || || ||||| |||| | ||| ||||| | ||
Sbjct 1074446 ATGGTCATTTGGAGGGAGACCTCGCCGTGATGATAGGCCGACATCTCGGCCACCGAACCG 1074505
Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544
| || || ||||| || | ||| | | |||| |||||| ||||| | | || |||
Sbjct 1074506 GAAAGTTGCGCCACTTTAACCTCTCGCTTATCGTTCCTCTTGAAGCAGGTAAACATAACC 1074565
Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570
|| ||||| | |||||||| |||||
Sbjct 1074566 TTACGCTGGCCCGGCTTCAGGCCATC 1074591
>seq4774
Length=608034
Score = 156 bits (172), Expect = 5e-33
Identities = 194/266 (73%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||||||||||| ||| || | ||||||||| || | | ||| |||||||| ||
Sbjct 452658 GTGAAAATGTAACGAGCGCTGGCCGAATCCTTGCCGCCGGTCAAACGGGTACCGAACTGA 452717
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| | ||||||| ||||| | |||||||| |||||| |||| || |||| || |||
Sbjct 452718 CCCCGGGGCTCCAGAAGGTTTATGTTGTTGGATCCCACATAGTTCTGGGCCAGATTCACA 452777
Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484
|| || ||||||| |||| || || ||||| |||| | ||| ||||| | ||
Sbjct 452778 ATGGTCATTTGGAGGGAGACCTCGCCGTGATGATAGGCCGACATCTCGGCCACCGAACCG 452837
Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544
| || || ||||| || | ||| | | |||| |||||| ||||| | | || |||
Sbjct 452838 GAAAGTTGCGCCACTTTAACCTCTCGCTTATCGTTCCTCTTGAAGCAGGTAAACATAACC 452897
Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570
|| ||||| | |||||||| |||||
Sbjct 452898 TTACGCTGGCCCGGCTTCAGGCCATC 452923
>seq4678
Length=1229792
Score = 105 bits (116), Expect = 7e-18
Identities = 515/812 (63%), Gaps = 13/812 (2%)
Strand=Plus/Plus
Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521
||| || || ||| ||| ||||| ||||||||||| || |||| |||||| |||||||
Sbjct 1146122 ATACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCCAT 1146181
Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTT---CTCCCCAAACTGTGCCATGAG 74578
||| ||| || ||||| | ||| || ||| | | || | || ||| ||
Sbjct 1146182 GAAGTTGAACGGATTCTTGGTGTTGTAGAT---CTTTCCCACGCCCAGCTCGACCAGCAG 1146238
Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTT 74638
||||| |||||||| | ||||||||||| ||| | | ||||||||| || ||
Sbjct 1146239 ACGATCGGCCACAAACTCAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATT 1146298
Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTT 74698
|||||| || ||||||| ||||| ||| | || ||| ||| ||||
Sbjct 1146299 AACCGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTC 1146358
Query 74699 G-TGAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAAACT 74757
| ||| || | | | | | | ||| || | | | | ||| ||||| |
Sbjct 1146359 GATGATGCGCTCGCGCCTCGGTCGCTGCAC-CAGATGCTGGAACATCAGCACCGCAAAGT 1146417
Query 74758 CCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAA 74817
| ||| || ||||| | | |||| ||||| || || | | |||||||| |
Sbjct 1146418 CACAGTGCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCA 1146477
Query 74818 GTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGA 74877
| || |||||||||| ||| || |||| ||| || |||||||| ||||| ||||
Sbjct 1146478 GGCCGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTCGA 1146537
Query 74878 CACACGCAAAGGCGACAAGGCGTTGCGCGAA---CGGTGCATCGGAAGTCATCCAAGTCT 74934
| ||||| || | | ||| | | | || | | | ||||| ||||| | |
Sbjct 1146538 CGGCGGCAAACGCAATGATGCGCTCCCCAAAGTTGGCCGACTTGGAAGAGATCCAGGACA 1146597
Query 74935 GAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTG 74994
| ||||| ||||| || || || ||||| || | || || || || | ||| || |
Sbjct 1146598 GGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATGGTCTCAATGGCATTGAACAGATATT 1146657
Query 74995 CCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAA 75054
|| || | || ||| | | |||| |||| | |||| |||||||||| |
Sbjct 1146658 CCCGCTGGTGTGGGTCCCGAATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATGCA 1146717
Query 75055 TCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCC 75113
||| || ||| |||| | | || || | || ||||| | |||||||| |||
Sbjct 1146718 CGTTCTCCATG-GCGATCTGGAAGCCATAAAAGCAGCGGGCCTCGGTGATCTGTACCTCC 1146776
Query 75114 TTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCC 75173
| ||| | | | |||||| |||| || || || |||||||| || || |||
Sbjct 1146777 TGGCTAAAGCGCTCCACCAGATTCTCGTTGACAATACCATCGGAGGCGGCAAAGAAGGCC 1146836
Query 75174 AGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCC 75233
|| || ||| |||||||| || || || | || | ||| || | || |||
Sbjct 1146837 AGCACATGGGAGATGAAGTGGCGTTCGTCATCCTTAAGGCGATGCCAGTCGGTGAGATCC 1146896
Query 75234 CCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265
| ||| || | ||| || || ||||||||
Sbjct 1146897 TTGGACAAGTCCACCTCTTCCACGGTCCAGAA 1146928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547180834531800
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