Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_028449.1
Length=63569
Score E
Sequences producing significant alignments: (Bits) Value
seq1486 150 7e-32
seq4902 149 3e-31
seq4198 145 3e-30
seq4797 122 4e-23
seq3455 102 3e-17
>seq1486
Length=18552
Score = 150 bits (166), Expect = 7e-32
Identities = 288/421 (68%), Gaps = 14/421 (3%)
Strand=Plus/Minus
Query 2586 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 2645
|| |||||||| ||||||| ||||| | |||||||||||||| || || | | ||||
Sbjct 764 CGCCGATTGTTGAACCAGTCGACCCATTTAAGTGTGGCCAGTTCAACCGCTTCCCTGTTT 705
Query 2646 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 2702
||||| | || || | || | || | |||||| || || || ||| |||| ||
Sbjct 704 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAGAGCCCGTTAATGGTCTCCGCG 645
Query 2703 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 2762
| || || ||||| || || || || || ||| || | | || |||||
Sbjct 644 AGGGCATTATCATAGGAATCTCCAACGCTTCCGACTGAGGCAACGAGCCCCGCTTCAGCC 585
Query 2763 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 2820
|||| | ||| ||| | |||||||||||| |||| ||| |||||| |
Sbjct 584 AGTCTTTGCGTGTAGCGAATGGACACATACTGACAGCCGCGATCTGAATGATGGGTCACT 525
Query 2821 -TGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT 2879
| || || | | |||| |||||||| || |||||||||||||| |||| |
Sbjct 524 TTTCCCTCAGGTTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGCACGAA-GTCGGT 466
Query 2880 TCCATAGAC----GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 2935
|| | | |||||||| ||||| ||||| ||| | ||||||||||||||||||
Sbjct 465 ---ATGGGCCGTTGATGAGACACGCCAGCCCACAATGACCCGGGCAAACACATCAATGAT 409
Query 2936 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 2995
|| || ||||| || ||||||||||| ||| || ||||||||||| | ||||| ||
Sbjct 408 GAAGGCTACATAAACAAAGCCCTGCCAAGTGGAAACATAAGTAAAATCCGAAACCCAGAG 349
Query 2996 C 2996
|
Sbjct 348 C 348
Score = 150 bits (166), Expect = 7e-32
Identities = 293/429 (68%), Gaps = 14/429 (3%)
Strand=Plus/Plus
Query 2586 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 2645
|| |||||||| ||||||| ||||| | |||||||||||||| || || | | ||||
Sbjct 17790 CGCCGATTGTTGAACCAGTCGACCCATTTAAGTGTGGCCAGTTCAACCGCTTCCCTGTTT 17849
Query 2646 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 2702
||||| | || || | || | || | |||||| || || || ||| |||| ||
Sbjct 17850 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAGAGCCCGTTAATGGTCTCCGCG 17909
Query 2703 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 2762
| || || ||||| || || || || || ||| || | | || |||||
Sbjct 17910 AGGGCATTATCATAGGAATCTCCAACGCTTCCGACTGAGGCAACGAGCCCCGCTTCAGCC 17969
Query 2763 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 2820
|||| | ||| ||| | |||||||||||| |||| ||| |||||| |
Sbjct 17970 AGTCTTTGCGTGTAGCGAATGGACACATACTGACAGCCGCGATCTGAATGATGGGTCACT 18029
Query 2821 -TGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT 2879
| || || | | |||| |||||||| || |||||||||||||| |||| |
Sbjct 18030 TTTCCCTCAGGTTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGCACGAA-GTCGGT 18088
Query 2880 TCCATAGAC----GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 2935
|| | | |||||||| ||||| ||||| ||| | ||||||||||||||||||
Sbjct 18089 ---ATGGGCCGTTGATGAGACACGCCAGCCCACAATGACCCGGGCAAACACATCAATGAT 18145
Query 2936 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 2995
|| || ||||| || ||||||||||| ||| || ||||||||||| | ||||| ||
Sbjct 18146 GAAGGCTACATAAACAAAGCCCTGCCAAGTGGAAACATAAGTAAAATCCGAAACCCAGAG 18205
Query 2996 CTGGTCAGG 3004
| || |||
Sbjct 18206 CCTGTTAGG 18214
>seq4902
Length=30050
Score = 149 bits (164), Expect = 3e-31
Identities = 281/408 (69%), Gaps = 14/408 (3%)
Strand=Plus/Plus
Query 2599 ACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTTTTCCAG---CTCT 2655
||||||| ||||| | ||||| |||||||| || | | | ||||||||| | ||
Sbjct 14799 ACCAGTCGACCCATTTAAGTGTTGCCAGTTCGACCGCGTCCCTGTTTTTCCACGGCCCCT 14858
Query 2656 TACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCCATCGCGTTGTCAT 2715
|||| || | || | ||||||||| || || ||| |||| |||| ||||||||||
Sbjct 14859 GCCGGTAGATCAATTCGGTTTTGTAAAGTCCGTTAATGGTCTCTGCCAGGGCGTTGTCAT 14918
Query 2716 ACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTTAGTCGCTCCGTAT 2775
| || || || ||| || || || | | || ||||| |||| | ||| |
Sbjct 14919 AGGAATCCCCAACACTACCGACAGAAGCAACAAGGCCCGCTTCAGCCAGTCTTTGCGTGT 14978
Query 2776 AGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG----TGCC--AGACG 2829
|| | |||||||| ||| |||| || |||||| | | || || |
Sbjct 14979 AGCGAATGGACACATATTGACAGCCGCGGTCCGAATGATGGGTCACTTTTCCCTCAGGCT 15038
Query 2830 GACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT-TCCATAGAC 2888
| | || |||| ||||||||||| || ||||||| ||| |||| | | ||
Sbjct 15039 GCCTCTGG---CACAGAGCCTGCTCCAGGGCGTCCAGCATGAA-GTCGGTATGGGCAGTG 15094
Query 2889 GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATAAACGCCACATAG 2948
|| ||||| ||||| ||||| || | |||||||||||||||||| || ||||||||
Sbjct 15095 GACGAGACGCGCCAGCCCACAATCACGCGGGCAAACACATCAATGATGAAAGCCACATAC 15154
Query 2949 ACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGC 2996
|| ||||||||||||||| |||||||||||||| | ||||| |||
Sbjct 15155 ACAAAGCCCTGCCATGTGGAAACGTAAGTAAAATCCGAAACCCAGAGC 15202
>seq4198
Length=487851
Score = 145 bits (160), Expect = 3e-30
Identities = 279/408 (68%), Gaps = 14/408 (3%)
Strand=Plus/Plus
Query 2586 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 2645
|| |||||||| ||||||| ||||| | |||||||||||||| || || | | ||||
Sbjct 350470 CGCCGATTGTTGAACCAGTCGACCCATTTAAGTGTGGCCAGTTCAACCGCTTCCCTGTTT 350529
Query 2646 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 2702
||||| | || || | || | || | |||||| || || || ||| |||| ||
Sbjct 350530 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAGAGCCCGTTAATGGTCTCCGCG 350589
Query 2703 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 2762
| || || ||||| || || || || || ||| || | | || |||||
Sbjct 350590 AGGGCATTATCATAGGAATCTCCAACGCTTCCGACTGAGGCAACGAGCCCCGCTTCAGCC 350649
Query 2763 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 2820
|||| | ||| ||| | |||||||||||| |||| ||| |||||| |
Sbjct 350650 AGTCTTTGCGTGTAGCGAATGGACACATACTGACAGCCGCGATCTGAATGATGGGTCACT 350709
Query 2821 -TGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT 2879
| || || | | |||| |||||||| || |||||||||||||| |||| |
Sbjct 350710 TTTCCCTCAGGTTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGCACGAA-GTCGGT 350768
Query 2880 TCCATAGAC----GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 2935
|| | | |||||||| ||||| ||||| ||| | ||||||||||||||||||
Sbjct 350769 ---ATGGGCCGTTGATGAGACACGCCAGCCCACAATGACCCGGGCAAACACATCAATGAT 350825
Query 2936 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATC 2983
|| || ||||| || ||||||||||| ||| || |||||||||||
Sbjct 350826 GAAGGCTACATAAACAAAGCCCTGCCAAGTGGAAACATAAGTAAAATC 350873
>seq4797
Length=43377
Score = 122 bits (134), Expect = 4e-23
Identities = 287/424 (68%), Gaps = 22/424 (5%)
Strand=Plus/Minus
Query 2586 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 2645
|| ||||| || ||||||| ||||| | ||||| |||||||| || || | | ||||
Sbjct 10443 CGCCGATTATTGAACCAGTCGACCCATTTAAGTGTTGCCAGTTCAACAGCTTCCCTGTTT 10384
Query 2646 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 2702
||||| | || || | || | || | ||||||||| || || ||| |||| |||
Sbjct 10383 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAAAGTCCGTTAATGGTCTCTGCC 10324
Query 2703 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 2762
| ||||| ||||| || || || ||| || || || | | || |||||
Sbjct 10323 AAGGCGTTATCATAGGAATCCCCAACACTGCCGACAGAAGCAACGAGCCCCGCTTCAGCC 10264
Query 2763 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 2820
|||| | ||| ||| | |||||||| ||| |||| ||| || ||| |
Sbjct 10263 AGTCTTTGCGTGTAGCGAATGGACACATATTGACAGCCGCGGTCGGAATGGTGGGTCACT 10204
Query 2821 --TGCC--AGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTC 2876
| || || | | | || |||| |||||||| || |||||||| ||||| |||
Sbjct 10203 TTTCCCTCAGGCTGCCTCTGG---CACAGAGCCTGCTCAAGGGCATCCAGTACGAA-GTC 10148
Query 2877 GTTTCCAT-AGACGATGAG---ACCCGCCACCCCACGATGTATCCG-GCAAACACATCAA 2931
| | || || || |||| || ||||| ||||| || | ||| ||||| || ||||
Sbjct 10147 GGT---ATGAGCCGTTGAGGAGACACGCCAACCCACAATA-ACCCGTGCAAAGACGTCAA 10092
Query 2932 TGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCC 2991
|||| || |||||||| || ||||||||||| ||| || || || ||||| | ||||
Sbjct 10091 TGATGAAGGCCACATAAACAAAGCCCTGCCAAGTGGAAACATACGTGAAATCCGAAACCC 10032
Query 2992 ACAG 2995
||||
Sbjct 10031 ACAG 10028
Score = 114 bits (126), Expect = 5e-21
Identities = 286/424 (67%), Gaps = 23/424 (5%)
Strand=Plus/Minus
Query 2586 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 2645
|| ||||| || ||||||| ||||| | ||||| |||||||| || || | | ||||
Sbjct 1284 CGCCGATTATTGAACCAGTCGACCCATTTAAGTGTTGCCAGTTCAACAGCTTCCCTGTTT 1225
Query 2646 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 2702
||||| | || || | || | || | ||||||||| || || ||| |||| |||
Sbjct 1224 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAAAGTCCGTTAATGGTCTCTGCC 1165
Query 2703 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 2762
| ||||| ||||| || || || ||| || || || | | ||| ||||
Sbjct 1164 AAGGCGTTATCATAGGAATCCCCAACACTGCCGACAGAAGCAACGAGCCCG-CTTCAGCC 1106
Query 2763 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 2820
|||| | ||| ||| | ||| |||| ||| |||| ||| || ||| |
Sbjct 1105 AGTCTTTGCGTGTAGCGAATGGACGCATATTGACAGCCGCGGTCGGAATGGTGGGTCACT 1046
Query 2821 --TGCC--AGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTC 2876
| || || | | | || |||| |||||||| || |||||||| ||||| |||
Sbjct 1045 TTTCCCTCAGGCTGCCTCTGG---CACAGAGCCTGCTCAAGGGCATCCAGTACGAA-GTC 990
Query 2877 GTTTCCAT-AGACGATGAG---ACCCGCCACCCCACGATGTATCCG-GCAAACACATCAA 2931
| | || || || |||| || ||||| ||||| || | ||| ||||| || ||||
Sbjct 989 GGT---ATGAGCCGTTGAGGAGACACGCCAACCCACAATA-ACCCGTGCAAAGACGTCAA 934
Query 2932 TGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCC 2991
|||| || |||||||| || ||||||||||| ||| || || || ||||| | ||||
Sbjct 933 TGATGAAGGCCACATAAACAAAGCCCTGCCAAGTGGAAACATACGTGAAATCCGAAACCC 874
Query 2992 ACAG 2995
||||
Sbjct 873 ACAG 870
>seq3455
Length=1029
Score = 102 bits (112), Expect = 3e-17
Identities = 284/425 (67%), Gaps = 23/425 (5%)
Strand=Plus/Plus
Query 2586 CGTCGATTGTTATACCAGTCCACCCACGTTA-GTGTGGCCAGTTCCACTTCTGCACGGTT 2644
|| ||||| || ||||||| ||||| ||| |||| ||||| || || || | | |||
Sbjct 17 CGCCGATTATTGAACCAGTCGACCCAGTTTAAGTGTTGCCAGCTCAACAGCTTCCCTGTT 76
Query 2645 TTTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGC 2701
|||||| | || |||| || | || ||||||||| || || ||| |||| ||
Sbjct 77 TTTCCATGGTCCCTGCCGGTAGATCAATTCGATTTTGTAAAGTCCGTTAATGGTCTCCGC 136
Query 2702 CATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTT 2761
|| ||||| ||||| || || || ||| || || || | | || |||||
Sbjct 137 CAAAGCGTTATCATAGGAATCCCCAACACTTCCGACAGAAGCAACAAGGCCCGCTTCAGC 196
Query 2762 TAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG- 2820
|||| | ||| ||| | |||||||| ||| | || ||| || ||| |
Sbjct 197 CAGTCTTTGCGTGTAGCGAATGGACACATATTGACATCCGCGGTCGGAATGGTGGGTCAC 256
Query 2821 ---TGCC--AGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGT 2875
| || || | | | || |||| |||||||| || |||||||||||||| ||
Sbjct 257 TTTTCCCTCAGGCTGCCTCTGG---CACAGAGCCTGCTCGAGGGCATCCAGCACGAA-GT 312
Query 2876 CGTTTCCAT-AGACGATGAG---ACCCGCCACCCCACGATGTATCCG-GCAAACACATCA 2930
|| | || || || |||| || ||||| ||||| || | ||| || || ||||||
Sbjct 313 CGGT---ATGAGCCGTTGAGGAGACACGCCAACCCACAATA-ACCCGTGCGAATACATCA 368
Query 2931 ATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACC 2990
||||| || | | ||| || ||||||||||| ||| || || || ||||| | |||
Sbjct 369 ATGATGAAGACGAAATAAACAAAGCCCTGCCAGGTGGAAACATACGTGAAATCCGAAACC 428
Query 2991 CACAG 2995
|||||
Sbjct 429 CACAG 433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 203283262298530
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