Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq1486 150 7e-32 seq4902 149 3e-31 seq4198 145 3e-30 seq4797 122 4e-23 seq3455 102 3e-17 >seq1486 Length=18552 Score = 150 bits (166), Expect = 7e-32 Identities = 288/421 (68%), Gaps = 14/421 (3%) Strand=Plus/Minus Query 2586 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 2645 || |||||||| ||||||| ||||| | |||||||||||||| || || | | |||| Sbjct 764 CGCCGATTGTTGAACCAGTCGACCCATTTAAGTGTGGCCAGTTCAACCGCTTCCCTGTTT 705 Query 2646 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 2702 ||||| | || || | || | || | |||||| || || || ||| |||| || Sbjct 704 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAGAGCCCGTTAATGGTCTCCGCG 645 Query 2703 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 2762 | || || ||||| || || || || || ||| || | | || ||||| Sbjct 644 AGGGCATTATCATAGGAATCTCCAACGCTTCCGACTGAGGCAACGAGCCCCGCTTCAGCC 585 Query 2763 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 2820 |||| | ||| ||| | |||||||||||| |||| ||| |||||| | Sbjct 584 AGTCTTTGCGTGTAGCGAATGGACACATACTGACAGCCGCGATCTGAATGATGGGTCACT 525 Query 2821 -TGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT 2879 | || || | | |||| |||||||| || |||||||||||||| |||| | Sbjct 524 TTTCCCTCAGGTTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGCACGAA-GTCGGT 466 Query 2880 TCCATAGAC----GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 2935 || | | |||||||| ||||| ||||| ||| | |||||||||||||||||| Sbjct 465 ---ATGGGCCGTTGATGAGACACGCCAGCCCACAATGACCCGGGCAAACACATCAATGAT 409 Query 2936 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 2995 || || ||||| || ||||||||||| ||| || ||||||||||| | ||||| || Sbjct 408 GAAGGCTACATAAACAAAGCCCTGCCAAGTGGAAACATAAGTAAAATCCGAAACCCAGAG 349 Query 2996 C 2996 | Sbjct 348 C 348 Score = 150 bits (166), Expect = 7e-32 Identities = 293/429 (68%), Gaps = 14/429 (3%) Strand=Plus/Plus Query 2586 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 2645 || |||||||| ||||||| ||||| | |||||||||||||| || || | | |||| Sbjct 17790 CGCCGATTGTTGAACCAGTCGACCCATTTAAGTGTGGCCAGTTCAACCGCTTCCCTGTTT 17849 Query 2646 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 2702 ||||| | || || | || | || | |||||| || || || ||| |||| || Sbjct 17850 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAGAGCCCGTTAATGGTCTCCGCG 17909 Query 2703 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 2762 | || || ||||| || || || || || ||| || | | || ||||| Sbjct 17910 AGGGCATTATCATAGGAATCTCCAACGCTTCCGACTGAGGCAACGAGCCCCGCTTCAGCC 17969 Query 2763 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 2820 |||| | ||| ||| | |||||||||||| |||| ||| |||||| | Sbjct 17970 AGTCTTTGCGTGTAGCGAATGGACACATACTGACAGCCGCGATCTGAATGATGGGTCACT 18029 Query 2821 -TGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT 2879 | || || | | |||| |||||||| || |||||||||||||| |||| | Sbjct 18030 TTTCCCTCAGGTTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGCACGAA-GTCGGT 18088 Query 2880 TCCATAGAC----GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 2935 || | | |||||||| ||||| ||||| ||| | |||||||||||||||||| Sbjct 18089 ---ATGGGCCGTTGATGAGACACGCCAGCCCACAATGACCCGGGCAAACACATCAATGAT 18145 Query 2936 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 2995 || || ||||| || ||||||||||| ||| || ||||||||||| | ||||| || Sbjct 18146 GAAGGCTACATAAACAAAGCCCTGCCAAGTGGAAACATAAGTAAAATCCGAAACCCAGAG 18205 Query 2996 CTGGTCAGG 3004 | || ||| Sbjct 18206 CCTGTTAGG 18214 >seq4902 Length=30050 Score = 149 bits (164), Expect = 3e-31 Identities = 281/408 (69%), Gaps = 14/408 (3%) Strand=Plus/Plus Query 2599 ACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTTTTCCAG---CTCT 2655 ||||||| ||||| | ||||| |||||||| || | | | ||||||||| | || Sbjct 14799 ACCAGTCGACCCATTTAAGTGTTGCCAGTTCGACCGCGTCCCTGTTTTTCCACGGCCCCT 14858 Query 2656 TACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCCATCGCGTTGTCAT 2715 |||| || | || | ||||||||| || || ||| |||| |||| |||||||||| Sbjct 14859 GCCGGTAGATCAATTCGGTTTTGTAAAGTCCGTTAATGGTCTCTGCCAGGGCGTTGTCAT 14918 Query 2716 ACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTTAGTCGCTCCGTAT 2775 | || || || ||| || || || | | || ||||| |||| | ||| | Sbjct 14919 AGGAATCCCCAACACTACCGACAGAAGCAACAAGGCCCGCTTCAGCCAGTCTTTGCGTGT 14978 Query 2776 AGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG----TGCC--AGACG 2829 || | |||||||| ||| |||| || |||||| | | || || | Sbjct 14979 AGCGAATGGACACATATTGACAGCCGCGGTCCGAATGATGGGTCACTTTTCCCTCAGGCT 15038 Query 2830 GACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT-TCCATAGAC 2888 | | || |||| ||||||||||| || ||||||| ||| |||| | | || Sbjct 15039 GCCTCTGG---CACAGAGCCTGCTCCAGGGCGTCCAGCATGAA-GTCGGTATGGGCAGTG 15094 Query 2889 GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATAAACGCCACATAG 2948 || ||||| ||||| ||||| || | |||||||||||||||||| || |||||||| Sbjct 15095 GACGAGACGCGCCAGCCCACAATCACGCGGGCAAACACATCAATGATGAAAGCCACATAC 15154 Query 2949 ACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGC 2996 || ||||||||||||||| |||||||||||||| | ||||| ||| Sbjct 15155 ACAAAGCCCTGCCATGTGGAAACGTAAGTAAAATCCGAAACCCAGAGC 15202 >seq4198 Length=487851 Score = 145 bits (160), Expect = 3e-30 Identities = 279/408 (68%), Gaps = 14/408 (3%) Strand=Plus/Plus Query 2586 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 2645 || |||||||| ||||||| ||||| | |||||||||||||| || || | | |||| Sbjct 350470 CGCCGATTGTTGAACCAGTCGACCCATTTAAGTGTGGCCAGTTCAACCGCTTCCCTGTTT 350529 Query 2646 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 2702 ||||| | || || | || | || | |||||| || || || ||| |||| || Sbjct 350530 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAGAGCCCGTTAATGGTCTCCGCG 350589 Query 2703 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 2762 | || || ||||| || || || || || ||| || | | || ||||| Sbjct 350590 AGGGCATTATCATAGGAATCTCCAACGCTTCCGACTGAGGCAACGAGCCCCGCTTCAGCC 350649 Query 2763 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 2820 |||| | ||| ||| | |||||||||||| |||| ||| |||||| | Sbjct 350650 AGTCTTTGCGTGTAGCGAATGGACACATACTGACAGCCGCGATCTGAATGATGGGTCACT 350709 Query 2821 -TGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT 2879 | || || | | |||| |||||||| || |||||||||||||| |||| | Sbjct 350710 TTTCCCTCAGGTTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGCACGAA-GTCGGT 350768 Query 2880 TCCATAGAC----GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 2935 || | | |||||||| ||||| ||||| ||| | |||||||||||||||||| Sbjct 350769 ---ATGGGCCGTTGATGAGACACGCCAGCCCACAATGACCCGGGCAAACACATCAATGAT 350825 Query 2936 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATC 2983 || || ||||| || ||||||||||| ||| || ||||||||||| Sbjct 350826 GAAGGCTACATAAACAAAGCCCTGCCAAGTGGAAACATAAGTAAAATC 350873 >seq4797 Length=43377 Score = 122 bits (134), Expect = 4e-23 Identities = 287/424 (68%), Gaps = 22/424 (5%) Strand=Plus/Minus Query 2586 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 2645 || ||||| || ||||||| ||||| | ||||| |||||||| || || | | |||| Sbjct 10443 CGCCGATTATTGAACCAGTCGACCCATTTAAGTGTTGCCAGTTCAACAGCTTCCCTGTTT 10384 Query 2646 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 2702 ||||| | || || | || | || | ||||||||| || || ||| |||| ||| Sbjct 10383 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAAAGTCCGTTAATGGTCTCTGCC 10324 Query 2703 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 2762 | ||||| ||||| || || || ||| || || || | | || ||||| Sbjct 10323 AAGGCGTTATCATAGGAATCCCCAACACTGCCGACAGAAGCAACGAGCCCCGCTTCAGCC 10264 Query 2763 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 2820 |||| | ||| ||| | |||||||| ||| |||| ||| || ||| | Sbjct 10263 AGTCTTTGCGTGTAGCGAATGGACACATATTGACAGCCGCGGTCGGAATGGTGGGTCACT 10204 Query 2821 --TGCC--AGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTC 2876 | || || | | | || |||| |||||||| || |||||||| ||||| ||| Sbjct 10203 TTTCCCTCAGGCTGCCTCTGG---CACAGAGCCTGCTCAAGGGCATCCAGTACGAA-GTC 10148 Query 2877 GTTTCCAT-AGACGATGAG---ACCCGCCACCCCACGATGTATCCG-GCAAACACATCAA 2931 | | || || || |||| || ||||| ||||| || | ||| ||||| || |||| Sbjct 10147 GGT---ATGAGCCGTTGAGGAGACACGCCAACCCACAATA-ACCCGTGCAAAGACGTCAA 10092 Query 2932 TGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCC 2991 |||| || |||||||| || ||||||||||| ||| || || || ||||| | |||| Sbjct 10091 TGATGAAGGCCACATAAACAAAGCCCTGCCAAGTGGAAACATACGTGAAATCCGAAACCC 10032 Query 2992 ACAG 2995 |||| Sbjct 10031 ACAG 10028 Score = 114 bits (126), Expect = 5e-21 Identities = 286/424 (67%), Gaps = 23/424 (5%) Strand=Plus/Minus Query 2586 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 2645 || ||||| || ||||||| ||||| | ||||| |||||||| || || | | |||| Sbjct 1284 CGCCGATTATTGAACCAGTCGACCCATTTAAGTGTTGCCAGTTCAACAGCTTCCCTGTTT 1225 Query 2646 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 2702 ||||| | || || | || | || | ||||||||| || || ||| |||| ||| Sbjct 1224 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAAAGTCCGTTAATGGTCTCTGCC 1165 Query 2703 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 2762 | ||||| ||||| || || || ||| || || || | | ||| |||| Sbjct 1164 AAGGCGTTATCATAGGAATCCCCAACACTGCCGACAGAAGCAACGAGCCCG-CTTCAGCC 1106 Query 2763 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 2820 |||| | ||| ||| | ||| |||| ||| |||| ||| || ||| | Sbjct 1105 AGTCTTTGCGTGTAGCGAATGGACGCATATTGACAGCCGCGGTCGGAATGGTGGGTCACT 1046 Query 2821 --TGCC--AGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTC 2876 | || || | | | || |||| |||||||| || |||||||| ||||| ||| Sbjct 1045 TTTCCCTCAGGCTGCCTCTGG---CACAGAGCCTGCTCAAGGGCATCCAGTACGAA-GTC 990 Query 2877 GTTTCCAT-AGACGATGAG---ACCCGCCACCCCACGATGTATCCG-GCAAACACATCAA 2931 | | || || || |||| || ||||| ||||| || | ||| ||||| || |||| Sbjct 989 GGT---ATGAGCCGTTGAGGAGACACGCCAACCCACAATA-ACCCGTGCAAAGACGTCAA 934 Query 2932 TGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCC 2991 |||| || |||||||| || ||||||||||| ||| || || || ||||| | |||| Sbjct 933 TGATGAAGGCCACATAAACAAAGCCCTGCCAAGTGGAAACATACGTGAAATCCGAAACCC 874 Query 2992 ACAG 2995 |||| Sbjct 873 ACAG 870 >seq3455 Length=1029 Score = 102 bits (112), Expect = 3e-17 Identities = 284/425 (67%), Gaps = 23/425 (5%) Strand=Plus/Plus Query 2586 CGTCGATTGTTATACCAGTCCACCCACGTTA-GTGTGGCCAGTTCCACTTCTGCACGGTT 2644 || ||||| || ||||||| ||||| ||| |||| ||||| || || || | | ||| Sbjct 17 CGCCGATTATTGAACCAGTCGACCCAGTTTAAGTGTTGCCAGCTCAACAGCTTCCCTGTT 76 Query 2645 TTTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGC 2701 |||||| | || |||| || | || ||||||||| || || ||| |||| || Sbjct 77 TTTCCATGGTCCCTGCCGGTAGATCAATTCGATTTTGTAAAGTCCGTTAATGGTCTCCGC 136 Query 2702 CATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTT 2761 || ||||| ||||| || || || ||| || || || | | || ||||| Sbjct 137 CAAAGCGTTATCATAGGAATCCCCAACACTTCCGACAGAAGCAACAAGGCCCGCTTCAGC 196 Query 2762 TAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG- 2820 |||| | ||| ||| | |||||||| ||| | || ||| || ||| | Sbjct 197 CAGTCTTTGCGTGTAGCGAATGGACACATATTGACATCCGCGGTCGGAATGGTGGGTCAC 256 Query 2821 ---TGCC--AGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGT 2875 | || || | | | || |||| |||||||| || |||||||||||||| || Sbjct 257 TTTTCCCTCAGGCTGCCTCTGG---CACAGAGCCTGCTCGAGGGCATCCAGCACGAA-GT 312 Query 2876 CGTTTCCAT-AGACGATGAG---ACCCGCCACCCCACGATGTATCCG-GCAAACACATCA 2930 || | || || || |||| || ||||| ||||| || | ||| || || |||||| Sbjct 313 CGGT---ATGAGCCGTTGAGGAGACACGCCAACCCACAATA-ACCCGTGCGAATACATCA 368 Query 2931 ATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACC 2990 ||||| || | | ||| || ||||||||||| ||| || || || ||||| | ||| Sbjct 369 ATGATGAAGACGAAATAAACAAAGCCCTGCCAGGTGGAAACATACGTGAAATCCGAAACC 428 Query 2991 CACAG 2995 ||||| Sbjct 429 CACAG 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203283262298530