Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq5094 84.2 2e-11 >seq5094 Length=366253 Score = 84.2 bits (92), Expect = 2e-11 Identities = 183/274 (67%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 29896 GTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29955 ||| | |||||| ||||| || | || ||||| || || || || || || | | Sbjct 188651 GTAAATGTGAGCATCTCCTAGAGTATGAACAAAATCACCGGGCTCAAGACCTACCTCTTT 188592 Query 29956 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 30015 || || | || || | |||| || || ||||||||||| || || || || || Sbjct 188591 TGCAATTAAGTTAGTCAAAAGAGCATAACTAGCGATGTTAAACGGAACTCCAAGGAAAAT 188532 Query 30016 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 30075 ||| || || ||| || | ||| || || | ||||||| | |||||||| ||| | Sbjct 188531 GTCGCCACTCCGCTGATACAACTGGCAACTCAGTTTTCCGTCGTTAACGTAAAATTGAAA 188472 Query 30076 CATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACAC 30135 ||| | || |||||||| || ||||| || | ||||| || |||||||| | || Sbjct 188471 CATTACATGACACGGAGGGAGTGCCATACTTCCAATGTCTTCTGGATTCCAGGCACTTAC 188412 Query 30136 GATGATGCGCCTGTCTTCTGGGTTGTTCCTGATG 30169 || || || || ||||| || ||| | ||| Sbjct 188411 AATCATTCGTCTTGAATCTGGATTATTCTTAATG 188378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406284942240972