Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq4644 113 3e-20
seq4810 111 1e-19
>seq4644
Length=1132839
Score = 113 bits (124), Expect = 3e-20
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| |||||||| |||||| || ||||| || || || || || ||
Sbjct 752753 AGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGT 752694
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || ||||| || || |||||||| || || || || | |||||||
Sbjct 752693 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGTATTCCCTCC 752634
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| ||| ||| | || || | ||| ||||| ||||||||||| ||
Sbjct 752633 TTGTCTTGGAT-TTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGT 752575
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || |||||||| ||||||||
Sbjct 752574 GATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 752536
Score = 109 bits (120), Expect = 3e-19
Identities = 157/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| ||||| ||| |||||| || ||||| || || || || || ||
Sbjct 751840 AGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGT 751781
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || ||||| || || |||||||| || || || || | |||||||
Sbjct 751780 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCC 751721
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||||| | || || | ||| ||||| || || |||| |||
Sbjct 751720 TTGTCCTGGATCTTG-GCCTTCACATTCTCAATGGTGTCCGAAGGTTCAACCTCCAAGGT 751662
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || || ||||||||||| ||||||||
Sbjct 751661 GATGGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 751623
Score = 109 bits (120), Expect = 3e-19
Identities = 157/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| ||||| ||| |||||| || ||||| || || || || || ||
Sbjct 752297 AGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGT 752238
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| || || || || || || || |||||||| || || || || | |||||||
Sbjct 752237 CCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCC 752178
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || || | ||| ||||| |||||| |||| |||
Sbjct 752177 TTGTCCTGGATC-TTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGT 752119
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || ||||| | || ||||| || ||||||||
Sbjct 752118 GATGGTCTTTCCGGTAAGAGTCTTCACGAAGATCTGCAT 752080
Score = 109 bits (120), Expect = 3e-19
Identities = 157/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||||||| || || |||||| || ||||| || || || || || ||
Sbjct 752525 AGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGT 752466
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || ||||| || || |||||||| || || || || | |||||||
Sbjct 752465 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCC 752406
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || || | ||| ||||| |||||| |||| |||
Sbjct 752405 TTGTCCTGGATC-TTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGT 752347
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || ||||| | || |||||||| ||||||||
Sbjct 752346 GATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 752308
Score = 102 bits (112), Expect = 5e-17
Identities = 157/220 (71%), Gaps = 3/220 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| |||||||| |||||| || ||||| || ||||| || || ||
Sbjct 752069 AGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGG 752010
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || ||||| || || | |||||| || || || || | |||||||
Sbjct 752009 CCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCTGGAGGGATTCCCTCC 751950
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || || | ||| ||||| ||||||||||| ||
Sbjct 751949 TTGTCCTGGATC-TTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGT 751891
Query 34668 TATCGTTTTACCG-GTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || ||| || | || |||||||| ||||||||
Sbjct 751890 GATGGTCTTTCCGAGTAAGAGTCTTCACAAAGATCTGCAT 751851
>seq4810
Length=1195048
Score = 111 bits (122), Expect = 1e-19
Identities = 160/223 (72%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||||| || || ||| |||||| || ||||| ||||| || || || ||
Sbjct 316521 AGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGT 316462
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || |||||||| || | |||||| ||||| || || | ||||||
Sbjct 316461 CCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCC 316402
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | |||||||| | ||| || || | |||
Sbjct 316401 TTGTCCTGGATC-TTGGCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGACCTCAAGGGT 316343
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| || || ||||| || || || || || || |||||||||
Sbjct 316342 GATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCATGTTG 316300
Score = 107 bits (118), Expect = 1e-18
Identities = 164/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
||||||| | ||||||| |||||||| | |||| |||||| || ||||| ||||| |
Sbjct 316988 CGCCGCCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGG 316929
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
| | || || |||| || || || || |||||||| || | |||||| ||||| || |
Sbjct 316928 ACAAGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGG 316869
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656
| | ||||||||||| |||| || | || ||| | || ||||| | |||
Sbjct 316868 GAATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCGGAGGGCTCG 316810
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || | ||| || || || || || || || || || || |||||||||
Sbjct 316809 ACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 316759
Score = 93.3 bits (102), Expect = 3e-14
Identities = 154/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||||| || || || |||||| || ||||| || || || || || ||
Sbjct 316749 AGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGA 316690
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || |||||||| || | |||||| ||||| || || | ||||||
Sbjct 316689 CCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCC 316630
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | ||| || || | ||| || || | |||
Sbjct 316629 TTGTCCTGGATC-TTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGT 316571
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || ||||| || || || || || |||||||||
Sbjct 316570 GATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCATG 316531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314709880321853
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |