Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq4810 150 2e-31
seq4765 141 8e-29
seq4863 140 3e-28
seq4764 134 1e-26
>seq4810
Length=1195048
Score = 150 bits (166), Expect = 2e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| || || || || ||| ||||||||||| |||| || ||||| || || || ||
Sbjct 316303 CATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATCACCCTTGAGGTCGAGCCCTC 316362
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|||| | || |||| ||||| || || || ||||| || ||||| || || || ||
Sbjct 316363 CGACACAATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 316422
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | || | ||||| || || |||| ||| | ||| | |||||||||||
Sbjct 316423 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGATTACAA 316482
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||| ||| | || |||||| ||||| |||| || |||||
Sbjct 316483 CATCCAGAAGGAGTCCACCCTTCACTTGGTTCTGCGTCTGCGTGGAGGCAT 316533
Score = 143 bits (158), Expect = 2e-29
Identities = 169/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || ||| |||| |||||| | || || ||||| || || || ||
Sbjct 316759 CATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTC 316818
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|||| | || |||| ||||| || || || ||||| || ||||| || || || ||
Sbjct 316819 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 316878
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | || | ||||| || || |||| ||| | ||| | |||||||||||
Sbjct 316879 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAA 316938
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
||| || |||||||| || || |||||||| ||||| |||| || |||
Sbjct 316939 CATCCAGAAGGAGTCCACTTTGCATTTGGTCCTGCGTCTGCGTGGCGGC 316987
Score = 141 bits (156), Expect = 8e-29
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || ||| ||||||||||| | || || ||||| || || || ||
Sbjct 316531 CATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATCACCCTTGAGGTCGAGCCCTC 316590
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||||| ||||| || || || ||||| || ||||| || || || ||
Sbjct 316591 CGATACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 316650
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | || | ||||| || || |||| || || || | || || |||||
Sbjct 316651 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGATGGTCGCACTCTCTCTGACTACAA 316710
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||||||| | || |||||| ||||| |||| || |||||
Sbjct 316711 CATCCAGAAGGAGTCGACCCTTCACTTGGTTCTGCGTCTGCGCGGAGGCAT 316761
>seq4765
Length=3541379
Score = 141 bits (156), Expect = 8e-29
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || || |||||| | || |||||||| || ||||||||
Sbjct 2921626 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 2921567
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | |||||| || ||||| ||||||||||| || || || |||||
Sbjct 2921566 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 2921507
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | || ||||| || ||||||| | ||| | || || || |||
Sbjct 2921506 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 2921447
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
||||| |||||||| ||||| || ||||| | || | || ||||||
Sbjct 2921446 ATTCAGAAGGAGTCTACCTTGCACTTGGTGCTCCGCCTTCGTGGTGGC 2921399
>seq4863
Length=1240122
Score = 140 bits (154), Expect = 3e-28
Identities = 170/232 (73%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045
|||||||||| || || ||||| || ||||||||| | || || || || ||||| || |
Sbjct 1063877 CCATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCTT 1063936
Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105
| ||| | || |||| ||||| || || || ||||| || ||||| || || ||||
Sbjct 1063937 CGGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATC 1063996
Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165
| |||||| | || | |||||||| || |||| || | || | ||||| ||||
Sbjct 1063997 AGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACA 1064056
Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||| || |||||||||||| | || ||||| | || |||| ||||||||
Sbjct 1064057 ACATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGTGGTGGCAT 1064108
>seq4764
Length=1750656
Score = 134 bits (148), Expect = 1e-26
Identities = 185/259 (71%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 135474 TGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCA 135533
||||||||||||| |||| |||||| || || ||||||||||| || || ||||||
Sbjct 341582 TGTGGAACGCGGCGCAACTGCAGCTGGTTCGCGAGGGCAAAATGCATGGTTTCTTGCGCA 341641
Query 135534 TGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACG 135593
|||| ||||| || ||||| | || ||| | |||| | ||||||| | |||
Sbjct 341642 TGTACTGGGCCAAGAAGATCCTCGAGTGGAGCCCCACGCCGGAGCAGGCGCTCGAGTACG 341701
Query 135594 CAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTT 135653
| || | | || || | ||||| | || || |||||| | || ||||| || ||||
Sbjct 341702 CCATCCTGCTGAACGACAAGTACAGCCTGGACGGGCGCGATCCCAACGGCTATGTGGGTT 341761
Query 135654 GTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCA 135713
| |||||||| || |||| || |||||| || ||||||||||| | || || |
Sbjct 341762 GCATGTGGTCCATCGGCGGCGTCCACGATATGGGCTGGAAGGAGCGGGCCATCTTCGGTA 341821
Query 135714 AGATTCGCTATATGAACTA 135732
||||||| || ||||| ||
Sbjct 341822 AGATTCGGTACATGAATTA 341840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434890451056320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |