Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_028667.1 Length=39593 Score E Sequences producing significant alignments: (Bits) Value seq1269 82.4 2e-11 >seq1269 Length=15413 Score = 82.4 bits (90), Expect = 2e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 16406 TGCGCGGCCTGCAGGGCGACGTGGTGATCGACGAGGCGGCGTTCCACGAGTCCCTGGAGG 16465 ||||||| ||||||| ||| | || || || || || ||||| || ||||| | Sbjct 10325 TGCGCGGTATGCAGGGATTGGTGATTATTGATGAAGCCGCCTTCCATGATGATCTGGAAG 10266 Query 16466 AACTGCTGAAGGCCGCCCTGGCGCTGACGATGTGGGGTAACAAGGTCCGCCTGATCAGCA 16525 |||| ||||| || || |||||| || ||||||||| |||||| | | ||||||| Sbjct 10265 AACTTCTGAAAGCTGCTCTGGCGTTGCTGATGTGGGGCGGCAAGGTGCTTGTTATCAGCA 10206 Query 16526 CCCACAACGGCGTCGACAACCCGTT 16550 |||| || |||| | |||||||| Sbjct 10205 CCCATAATGGCGACACGAACCCGTT 10181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126568272614310