Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_028911.1 Length=34176 Score E Sequences producing significant alignments: (Bits) Value seq4953 158 3e-34 >seq4953 Length=802672 Score = 158 bits (174), Expect = 3e-34 Identities = 225/317 (71%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 21660 CGTGATTCAAGCAAAGCAAAATTCTCAACAATGACCTCAGTCACGAATACTTTCTGGCCT 21719 |||| |||||| | | ||| |||||||||| || || || || | ||| ||||| Sbjct 673000 CGTGGTTCAAGGAGGGTAAAGTTCTCAACAACTACTTCGGTAACATAAACTCGTTGGCCC 673059 Query 21720 TGCGCGTTATCATACGTACGTGTTTGGATATGACCTTCGATGCCAACAAGTGAACCCTTG 21779 ||| ||| || || | || || || || |||||||||| ||||||||||||||||| Sbjct 673060 TGCTTGTTCTCGTAATTTCGGGTCTGAATCCGACCTTCGATTCCAACAAGTGAACCCTTA 673119 Query 21780 TGCGTGAAGTTGGCAAAATTCTCGGCAGACTTACGCCAGATGGCACAATTGATGAAGTCA 21839 ||| |||||||||||| || || || || || ||||| || |||| |||| ||||||| Sbjct 673120 TGCACGAAGTTGGCAAAGTTTTCAGCTGATTTTCGCCAAATAACACAGTTGACGAAGTCA 673179 Query 21840 GTTTCTCGTTCCCCATTTGCGCTACGAAATTGGCGATCAACAGCAATCGTAAACGAACCA 21899 | ||| || || ||||| | | || | || |||||||| | ||||| | |||| Sbjct 673180 GCTTCCCGATCACCATTCGAATTGGTGAAACGACGGTCAACAGCTAGGGTAAAAGTACCA 673239 Query 21900 ACCGCTGTTCCGCTTTGCGTATAGCGAAGGCCAACGTCTTTAGTTAATCTGCCTGTTAAA 21959 || || | || |||| || || || | |||||||| ||||| | || || | | Sbjct 673240 ACTGCCGCGCCATTTTGGGTGTATCGCAAATCAACGTCTCGTGTTAAGCGTCCAGTAAGA 673299 Query 21960 GCAACTGAATTAAGCAT 21976 | |||| ||||| ||| Sbjct 673300 ACTACTGTATTAATCAT 673316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109234930868596