Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_029058.1 Length=106071 Score E Sequences producing significant alignments: (Bits) Value seq5094 104 2e-17 seq16 98.7 7e-16 >seq5094 Length=366253 Score = 104 bits (114), Expect = 2e-17 Identities = 80/94 (85%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 30471 AACGGAGAATGAGGGATTTGAACCCTCGCACCGGTTTCCCGGCCTACACCCTTAGCAGGG 30530 ||||||||| ||| |||| |||| ||||| ||| || | || |||||||||||||||||| Sbjct 1785 AACGGAGAAGGAGAGATTCGAACTCTCGCGCCGCTTACGCGACCTACACCCTTAGCAGGG 1726 Query 30531 GCGCCCCTTCAACCAACTTGGGTAATTCTCCAAA 30564 ||||| ||||| || ||||| ||| ||||||||| Sbjct 1725 GCGCCTCTTCAGCC-ACTTGAGTACTTCTCCAAA 1693 >seq16 Length=193047 Score = 98.7 bits (108), Expect = 7e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 34838 TGAATCCAGCGGCTCCTACACTGCCCAGAACGGTCAATACGTTGGTCGCTACCAACTTTC 34897 |||||| | ||||| |||||||| || ||| | ||| ||| |||||| | || Sbjct 174109 TGAATCAGGTGGCTCATACACTGCTTCAAATGGTAACTACTACGGTAAGTACCAATTATC 174050 Query 34898 CAGCTCTTACCTAAATGGTGACTATTCGCCAGCAAACCAAGAACAAGTAGCTGACCAGTA 34957 | || ||| |||||||||||||||| | ||| |||||||| ||| ||| |||| || Sbjct 174049 TAAGTCATACTTAAATGGTGACTATTCACAAGCTAACCAAGATAGAGTTGCTAACCAATA 173990 Query 34958 TGTCGCTTCACGCTATGGTTCGTGGAGTG 34986 || ||||||| |||||||| ||||||| Sbjct 173989 CGTAACTTCACGTTATGGTTCATGGAGTG 173961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339281140690032