Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_029058.1
Length=106071
Score E
Sequences producing significant alignments: (Bits) Value
seq5094 104 2e-17
seq16 98.7 7e-16
>seq5094
Length=366253
Score = 104 bits (114), Expect = 2e-17
Identities = 80/94 (85%), Gaps = 1/94 (1%)
Strand=Plus/Minus
Query 30471 AACGGAGAATGAGGGATTTGAACCCTCGCACCGGTTTCCCGGCCTACACCCTTAGCAGGG 30530
||||||||| ||| |||| |||| ||||| ||| || | || ||||||||||||||||||
Sbjct 1785 AACGGAGAAGGAGAGATTCGAACTCTCGCGCCGCTTACGCGACCTACACCCTTAGCAGGG 1726
Query 30531 GCGCCCCTTCAACCAACTTGGGTAATTCTCCAAA 30564
||||| ||||| || ||||| ||| |||||||||
Sbjct 1725 GCGCCTCTTCAGCC-ACTTGAGTACTTCTCCAAA 1693
>seq16
Length=193047
Score = 98.7 bits (108), Expect = 7e-16
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 34838 TGAATCCAGCGGCTCCTACACTGCCCAGAACGGTCAATACGTTGGTCGCTACCAACTTTC 34897
|||||| | ||||| |||||||| || ||| | ||| ||| |||||| | ||
Sbjct 174109 TGAATCAGGTGGCTCATACACTGCTTCAAATGGTAACTACTACGGTAAGTACCAATTATC 174050
Query 34898 CAGCTCTTACCTAAATGGTGACTATTCGCCAGCAAACCAAGAACAAGTAGCTGACCAGTA 34957
| || ||| |||||||||||||||| | ||| |||||||| ||| ||| |||| ||
Sbjct 174049 TAAGTCATACTTAAATGGTGACTATTCACAAGCTAACCAAGATAGAGTTGCTAACCAATA 173990
Query 34958 TGTCGCTTCACGCTATGGTTCGTGGAGTG 34986
|| ||||||| |||||||| |||||||
Sbjct 173989 CGTAACTTCACGTTATGGTTCATGGAGTG 173961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 339281140690032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |