Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq4761 178 1e-39 >seq4761 Length=1439414 Score = 178 bits (196), Expect = 1e-39 Identities = 455/688 (66%), Gaps = 11/688 (2%) Strand=Plus/Plus Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559 |||| ||| ||||| || || || |||||||| | ||| | || | || || Sbjct 1350185 AGCTTGGGAAACGGACGCGGAGTGCGCTGCAGCTGCTCCTTCAGCGGATCCACATGATTT 1350244 Query 6560 AGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACA 6619 ||||||| ||| || || |||| ||||| || | || ||||| || || ||| Sbjct 1350245 AGGTAGACATGAGCGTCGCCCATGGTATGAACAAAGTCACCAGGCTTCAGACCTGTCACA 1350304 Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || ||||||| || ||||| |||||| || |||||||| ||||| || | ||| Sbjct 1350305 TGGGCTATCATGTGGGTAAGCAGGGCGTAAGAGGCGATGTTGAATGGCACGCCCAGACCC 1350364 Query 6680 ATGTCTCCCGATCGT-TGATAGAGCTGGCAGGACAGCTCCCCAT--TCGCG----ACGTA 6732 ||||| | | || | || || ||||| ||||||| ||| ||| || | ||| | Sbjct 1350365 ATGTCAGC-GCTCCTCTGGTACAGCTGACAGGACAACTCGCCACGGTCCTGGGATACGAA 1350423 Query 6733 GAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCA 6792 ||| || ||| ||| || || || ||||||||| || | |||| || ||||| Sbjct 1350424 GAACTGCGCCAGGCAGTGACATGGCGGCAGCGCCATCTTTGGTATATCCAGGGGATTCCA 1350483 Query 6793 CGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTG 6852 ||| |||| | ||| | ||||| || || ||| | || |||||||| | | Sbjct 1350484 TGCGGACATGATGATGCGCCTGTCCGACGGATTGTTCTTTATCGTCTCGATCACCTGACG 1350543 Query 6853 CAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAA 6912 ||||||||| ||||| || ||||| | |||| |||||||| |||||||| Sbjct 1350544 CAGCTGGTCGATGCCCTGGCCGCTGTAGTCGTCGTCGCAGGTGCGATACTCTGCCCCAAA 1350603 Query 6913 GTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCC 6972 ||| | ||||||||| ||||| ||||||||||| || || | |||| | | || Sbjct 1350604 GTGCCGCCACTGGAAGCCGTATACCGGGCCCAAATCTCCGACTGCCCGCTCCGTGTGGCC 1350663 Query 6973 CCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGA 7032 | |||||||||| | || | | | || | ||||| || | ||| || Sbjct 1350664 CAGCTTGTCCAGGTACTCCCTGGTGCTGTTCCCATCCCATATGTGCACGTTTTTGGCTTG 1350723 Query 7033 GAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTT 7092 ||| ||||| || ||| || || ||||| || ||||||||| ||||| | Sbjct 1350724 GAGAAGCTTGGCGTCCGTCTTACCAGCGACAAACCAAAGTAGCTCCTCGGCCACGGCGCG 1350783 Query 7093 CCAGTACACACGTTTCGTCGTCAGCAGCGGAA---ATTCGCCCCGAAGGTTGTATCGGGC 7149 || | ||||| || || |||||||| |||| | ||||| || | ||| | || Sbjct 1350784 GAAGAAGACACGCTTGGTGGTCAGCAGGGGAAAGGACTCGCCGCGCATATTGAAGCGCAT 1350843 Query 7150 CTGTGTGCCGAACACGGAGAGGGTCCCC 7177 || | ||||||||||| || || ||| Sbjct 1350844 TTGGGCACCGAACACGGACAGTGTTCCC 1350871 Score = 178 bits (196), Expect = 1e-39 Identities = 455/688 (66%), Gaps = 11/688 (2%) Strand=Plus/Minus Query 34168 GGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGAAT---TTCC 34224 ||| || || ||||||||||| | || || | ||| | || ||||| | |||| Sbjct 1350871 GGGAACACTGTCCGTGTTCGGTGCCCAAATGCGCTTCAATATGCGCGGCGAGTCCTTTCC 1350812 Query 34225 GCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGT 34284 |||||||| || || ||||| | || | ||||| ||||||||| || ||||| || Sbjct 1350811 CCTGCTGACCACCAAGCGTGTCTTCTTCCGCGCCGTGGCCGAGGAGCTACTTTGGTTTGT 1350752 Query 34285 GAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCA 34344 || ||| || ||||| ||| || ||| | || ||||| | | Sbjct 1350751 CGCTGGTAAGACGGACGCCAAGCTTCTCCAAGCCAAAAACGTGCACATATGGGATGGGAA 1350692 Query 34345 CGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGG 34404 | | | | || | |||||||||| ||| | | |||| | || || ||||| Sbjct 1350691 CAGCACCAGGGAGTACCTGGACAAGCTGGGCCACACGGAGCGGGCAGTCGGAGATTTGGG 1350632 Query 34405 CCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGA 34464 |||||| ||||| ||||||||| | ||||||||||| |||||||| |||| | || Sbjct 1350631 CCCGGTATACGGCTTCCAGTGGCGGCACTTTGGGGCAGAGTATCGCACCTGCGACGACGA 1350572 Query 34465 CTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCC 34524 ||| || ||||| |||||||||| | |||||||| || | ||| || || Sbjct 1350571 CTACAGCGGCCAGGGCATCGACCAGCTGCGTCAGGTGATCGAGACGATAAAGAACAATCC 1350512 Query 34525 TGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCT 34584 ||||| | ||| | |||| ||| ||||| || |||| | || ||||||||| Sbjct 1350511 GTCGGACAGGCGCATCATCATGTCCGCATGGAATCCCCTGGATATACCAAAGATGGCGCT 1350452 Query 34585 CCCCCCGTGCCACACCCTCTGCCAATTCTACGT----CGCGA--ATGGGGAGCTGTCCTG 34638 || || || ||| ||| || |||| ||| | || ||| ||| ||||||| Sbjct 1350451 GCCGCCATGTCACTGCCTGGCGCAGTTCTTCGTATCCCAGGACCGTGGCGAGTTGTCCTG 1350392 Query 34639 CCAGCTCTATCA-ACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTT 34697 ||||| || || | || | | |||||||| | || ||||| |||||||| || || Sbjct 1350391 TCAGCTGTACCAGAGGAGC-GCTGACATGGGTCTGGGCGTGCCATTCAACATCGCCTCTT 1350333 Query 34698 ACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGC 34757 |||| ||||| || ||||||| || ||||| || || ||||| || | || | Sbjct 1350332 ACGCCCTGCTTACCCACATGATAGCCCATGTGACAGGTCTGAAGCCTGGTGACTTTGTTC 1350273 Query 34758 ATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGC 34817 |||| |||| || || ||| ||||||| || || | || | ||| | ||||||| Sbjct 1350272 ATACCATGGGCGACGCTCATGTCTACCTAAATCATGTGGATCCGCTGAAGGAGCAGCTGC 1350213 Query 34818 AACGAGAGCCCCGACCGTTCCCCCAGCT 34845 | || || || ||||| ||| |||| Sbjct 1350212 AGCGCACTCCGCGTCCGTTTCCCAAGCT 1350185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448233593537520