Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq4761 178 1e-39
>seq4761
Length=1439414
Score = 178 bits (196), Expect = 1e-39
Identities = 455/688 (66%), Gaps = 11/688 (2%)
Strand=Plus/Plus
Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559
|||| ||| ||||| || || || |||||||| | ||| | || | || ||
Sbjct 1350185 AGCTTGGGAAACGGACGCGGAGTGCGCTGCAGCTGCTCCTTCAGCGGATCCACATGATTT 1350244
Query 6560 AGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACA 6619
||||||| ||| || || |||| ||||| || | || ||||| || || |||
Sbjct 1350245 AGGTAGACATGAGCGTCGCCCATGGTATGAACAAAGTCACCAGGCTTCAGACCTGTCACA 1350304
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| || ||||||| || ||||| |||||| || |||||||| ||||| || | |||
Sbjct 1350305 TGGGCTATCATGTGGGTAAGCAGGGCGTAAGAGGCGATGTTGAATGGCACGCCCAGACCC 1350364
Query 6680 ATGTCTCCCGATCGT-TGATAGAGCTGGCAGGACAGCTCCCCAT--TCGCG----ACGTA 6732
||||| | | || | || || ||||| ||||||| ||| ||| || | ||| |
Sbjct 1350365 ATGTCAGC-GCTCCTCTGGTACAGCTGACAGGACAACTCGCCACGGTCCTGGGATACGAA 1350423
Query 6733 GAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCA 6792
||| || ||| ||| || || || ||||||||| || | |||| || |||||
Sbjct 1350424 GAACTGCGCCAGGCAGTGACATGGCGGCAGCGCCATCTTTGGTATATCCAGGGGATTCCA 1350483
Query 6793 CGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTG 6852
||| |||| | ||| | ||||| || || ||| | || |||||||| | |
Sbjct 1350484 TGCGGACATGATGATGCGCCTGTCCGACGGATTGTTCTTTATCGTCTCGATCACCTGACG 1350543
Query 6853 CAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAA 6912
||||||||| ||||| || ||||| | |||| |||||||| ||||||||
Sbjct 1350544 CAGCTGGTCGATGCCCTGGCCGCTGTAGTCGTCGTCGCAGGTGCGATACTCTGCCCCAAA 1350603
Query 6913 GTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCC 6972
||| | ||||||||| ||||| ||||||||||| || || | |||| | | ||
Sbjct 1350604 GTGCCGCCACTGGAAGCCGTATACCGGGCCCAAATCTCCGACTGCCCGCTCCGTGTGGCC 1350663
Query 6973 CCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGA 7032
| |||||||||| | || | | | || | ||||| || | ||| ||
Sbjct 1350664 CAGCTTGTCCAGGTACTCCCTGGTGCTGTTCCCATCCCATATGTGCACGTTTTTGGCTTG 1350723
Query 7033 GAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTT 7092
||| ||||| || ||| || || ||||| || ||||||||| ||||| |
Sbjct 1350724 GAGAAGCTTGGCGTCCGTCTTACCAGCGACAAACCAAAGTAGCTCCTCGGCCACGGCGCG 1350783
Query 7093 CCAGTACACACGTTTCGTCGTCAGCAGCGGAA---ATTCGCCCCGAAGGTTGTATCGGGC 7149
|| | ||||| || || |||||||| |||| | ||||| || | ||| | ||
Sbjct 1350784 GAAGAAGACACGCTTGGTGGTCAGCAGGGGAAAGGACTCGCCGCGCATATTGAAGCGCAT 1350843
Query 7150 CTGTGTGCCGAACACGGAGAGGGTCCCC 7177
|| | ||||||||||| || || |||
Sbjct 1350844 TTGGGCACCGAACACGGACAGTGTTCCC 1350871
Score = 178 bits (196), Expect = 1e-39
Identities = 455/688 (66%), Gaps = 11/688 (2%)
Strand=Plus/Minus
Query 34168 GGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGAAT---TTCC 34224
||| || || ||||||||||| | || || | ||| | || ||||| | ||||
Sbjct 1350871 GGGAACACTGTCCGTGTTCGGTGCCCAAATGCGCTTCAATATGCGCGGCGAGTCCTTTCC 1350812
Query 34225 GCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGT 34284
|||||||| || || ||||| | || | ||||| ||||||||| || ||||| ||
Sbjct 1350811 CCTGCTGACCACCAAGCGTGTCTTCTTCCGCGCCGTGGCCGAGGAGCTACTTTGGTTTGT 1350752
Query 34285 GAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCA 34344
|| ||| || ||||| ||| || ||| | || ||||| | |
Sbjct 1350751 CGCTGGTAAGACGGACGCCAAGCTTCTCCAAGCCAAAAACGTGCACATATGGGATGGGAA 1350692
Query 34345 CGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGG 34404
| | | | || | |||||||||| ||| | | |||| | || || |||||
Sbjct 1350691 CAGCACCAGGGAGTACCTGGACAAGCTGGGCCACACGGAGCGGGCAGTCGGAGATTTGGG 1350632
Query 34405 CCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGA 34464
|||||| ||||| ||||||||| | ||||||||||| |||||||| |||| | ||
Sbjct 1350631 CCCGGTATACGGCTTCCAGTGGCGGCACTTTGGGGCAGAGTATCGCACCTGCGACGACGA 1350572
Query 34465 CTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCC 34524
||| || ||||| |||||||||| | |||||||| || | ||| || ||
Sbjct 1350571 CTACAGCGGCCAGGGCATCGACCAGCTGCGTCAGGTGATCGAGACGATAAAGAACAATCC 1350512
Query 34525 TGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCT 34584
||||| | ||| | |||| ||| ||||| || |||| | || |||||||||
Sbjct 1350511 GTCGGACAGGCGCATCATCATGTCCGCATGGAATCCCCTGGATATACCAAAGATGGCGCT 1350452
Query 34585 CCCCCCGTGCCACACCCTCTGCCAATTCTACGT----CGCGA--ATGGGGAGCTGTCCTG 34638
|| || || ||| ||| || |||| ||| | || ||| ||| |||||||
Sbjct 1350451 GCCGCCATGTCACTGCCTGGCGCAGTTCTTCGTATCCCAGGACCGTGGCGAGTTGTCCTG 1350392
Query 34639 CCAGCTCTATCA-ACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTT 34697
||||| || || | || | | |||||||| | || ||||| |||||||| || ||
Sbjct 1350391 TCAGCTGTACCAGAGGAGC-GCTGACATGGGTCTGGGCGTGCCATTCAACATCGCCTCTT 1350333
Query 34698 ACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGC 34757
|||| ||||| || ||||||| || ||||| || || ||||| || | || |
Sbjct 1350332 ACGCCCTGCTTACCCACATGATAGCCCATGTGACAGGTCTGAAGCCTGGTGACTTTGTTC 1350273
Query 34758 ATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGC 34817
|||| |||| || || ||| ||||||| || || | || | ||| | |||||||
Sbjct 1350272 ATACCATGGGCGACGCTCATGTCTACCTAAATCATGTGGATCCGCTGAAGGAGCAGCTGC 1350213
Query 34818 AACGAGAGCCCCGACCGTTCCCCCAGCT 34845
| || || || ||||| ||| ||||
Sbjct 1350212 AGCGCACTCCGCGTCCGTTTCCCAAGCT 1350185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448233593537520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |