Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq4810 123 2e-23 >seq4810 Length=1195048 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || | || ||||||||||| || |||| Sbjct 316853 GACAAGGAGGGCATTCCCCCAGACCAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAG 316912 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| ||||||||||||||||||||| || ||| ||||||||||||||| || Sbjct 316913 GACGGACGCACCTTGTCCGATTACAACATCCAGAAGGAGTCCACTTTGCATTTGGTCCTG 316972 Query 28003 CGTTTGCGTGGCGGCG 28018 ||| |||||||||||| Sbjct 316973 CGTCTGCGTGGCGGCG 316988 Score = 105 bits (116), Expect = 5e-18 Identities = 165/236 (70%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || |||||||| || || || ||| | || || || ||| || |||| ||||| | Sbjct 316301 AACATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATCACCCTTGAGGTCGAGCCC 316360 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||||| ||||||| ||||| || || ||||| || || |||| Sbjct 316361 TCCGAC-----ACAATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCC 316415 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 || ||||| || | || ||||||||||| || |||| |||| ||||| | |||||| Sbjct 316416 CAGACCAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCG 316475 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||||| || ||| ||| | || |||||| ||||| ||||||| ||| Sbjct 316476 ATTACAACATCCAGAAGGAGTCCACCCTTCACTTGGTTCTGCGTCTGCGTGGAGGC 316531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355840103107707