Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq4810 123 2e-23
>seq4810
Length=1195048
Score = 123 bits (136), Expect = 2e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || || |||| || ||||| || | || ||||||||||| || ||||
Sbjct 316853 GACAAGGAGGGCATTCCCCCAGACCAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAG 316912
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||||| ||||||||||||||||||||| || ||| ||||||||||||||| ||
Sbjct 316913 GACGGACGCACCTTGTCCGATTACAACATCCAGAAGGAGTCCACTTTGCATTTGGTCCTG 316972
Query 28003 CGTTTGCGTGGCGGCG 28018
||| ||||||||||||
Sbjct 316973 CGTCTGCGTGGCGGCG 316988
Score = 105 bits (116), Expect = 5e-18
Identities = 165/236 (70%), Gaps = 10/236 (4%)
Strand=Plus/Plus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| |||||||| || || || ||| | || || || ||| || |||| ||||| |
Sbjct 316301 AACATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATCACCCTTGAGGTCGAGCCC 316360
Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901
||||| ||||||| ||||| || || ||||| || || ||||
Sbjct 316361 TCCGAC-----ACAATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCC 316415
Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961
|| ||||| || | || ||||||||||| || |||| |||| ||||| | ||||||
Sbjct 316416 CAGACCAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCG 316475
Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
||||||||||||| || ||| ||| | || |||||| ||||| ||||||| |||
Sbjct 316476 ATTACAACATCCAGAAGGAGTCCACCCTTCACTTGGTTCTGCGTCTGCGTGGAGGC 316531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355840103107707
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |