Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 178 3e-39
seq4644 163 7e-35
seq4810 159 8e-34
seq4863 140 8e-28
>seq4765
Length=3541379
Score = 178 bits (196), Expect = 3e-39
Identities = 176/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | ||| | || ||||| || || |||||||| || | |||||
Sbjct 2921405 ACGAAGGCGGAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGT 2921464
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||||||||||||||||| || ||||| || || || || || ||||||| |||
Sbjct 2921465 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCC 2921524
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||| |||||||| ||||| ||| || |||||||| ||||| || ||| ||||| ||
Sbjct 2921525 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAG 2921584
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATG 211120
|||||| ||||| |||||||| ||||| || || | |||||| || ||
Sbjct 2921585 AGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATCTTGTG 2921632
>seq4644
Length=1132839
Score = 163 bits (180), Expect = 7e-35
Identities = 164/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || |||||||| || |||||||| || || | ||||| | ||| |||
Sbjct 752291 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCT 752232
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| |||||||| | || || || || ||||| | ||| |||||||||
Sbjct 752231 TCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCC 752172
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || || |||||||| || || ||||| | ||||| |||
Sbjct 752171 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTC 752112
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
||||| || |||||||| || || | |||||||
Sbjct 752111 TTTCCGGTAAGAGTCTTCACGAAGATCTGCATT 752079
Score = 161 bits (178), Expect = 2e-34
Identities = 164/214 (77%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || |||||||| || |||||||| || || | ||||| | ||| ||
Sbjct 751834 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCC 751775
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| |||||||| | || || || || ||||| | ||| |||||||||
Sbjct 751774 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCC 751715
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || || |||||||| || ||||||||| | ||||| |||
Sbjct 751714 TGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGTTCAACCTCCAAGGTGATGGTC 751655
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116
||||| || | || || ||||| | ||||||||
Sbjct 751654 TTTCCAGTCAAGGTTTTCACAAAGATCTGCATTT 751621
Score = 161 bits (178), Expect = 2e-34
Identities = 165/214 (77%), Gaps = 1/214 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| ||||| ||||| || |||||||| || || | ||||| | |||||
Sbjct 752063 AGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCC 752004
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| ||||| || || || || || || ||||| | ||| |||||||||
Sbjct 752003 TCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCC 751944
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || || |||||||| || || || || |||||||| |||
Sbjct 751943 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTC 751884
Query 211083 TTTCC-CGTGAGAGTCTTTACAAACACCTGCATT 211115
||||| || |||||||| ||||| | |||||||
Sbjct 751883 TTTCCGAGTAAGAGTCTTCACAAAGATCTGCATT 751850
Score = 152 bits (168), Expect = 1e-31
Identities = 156/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
|| || || ||||| || |||||||| || || | ||||| | ||| || |||||||||
Sbjct 752510 TGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCCAGCTGC 752451
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
||||| |||||||| | || || || || ||||| | ||| |||||||||||||||||
Sbjct 752450 TTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATCTTG 752391
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
||||| || || |||||||| || || ||||| | ||||| |||||||| ||
Sbjct 752390 GCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTCTTTCCGGTC 752331
Query 211092 AGAGTCTTTACAAACACCTGCATT 211115
|| ||||| ||||| | |||||||
Sbjct 752330 AGGGTCTTCACAAAGATCTGCATT 752307
Score = 150 bits (166), Expect = 4e-31
Identities = 161/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| ||||| ||||| || |||||||| || || | ||||| | ||| ||
Sbjct 752747 AGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCC 752688
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| |||||||| | || || || || || || | ||| ||||||||
Sbjct 752687 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGTATTCCCTCCTTGTCT 752628
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || ||||| || || |||||||| || || || || |||||||| |||
Sbjct 752627 TGGATTTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTC 752568
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
||||| || || ||||| ||||| | |||||||
Sbjct 752567 TTTCCAGTCAGGGTCTTCACAAAGATCTGCATT 752535
>seq4810
Length=1195048
Score = 159 bits (176), Expect = 8e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | || || | |||||| |||||||| || |||||||| ||||| | ||
Sbjct 316528 TCCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAG 316469
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | ||| || ||||||||||| || || ||||| || || || ||||| || ||||
Sbjct 316468 GGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAAT 316409
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| ||||||||||||||||| || ||||| ||||| ||||| ||| || |||||
Sbjct 316408 GCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGACCTC 316349
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| ||||| ||||| || || | |||||| || || | ||||| ||
Sbjct 316348 AAGGGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCATGTT 316301
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | || | ||||||||| || |||||||| ||||| | | ||| | ||| ||
Sbjct 316971 AGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCC 316912
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || || ||||| || || || ||||| || |||| || |||||||||
Sbjct 316911 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 316852
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| ||||||||||| ||| || ||||| || ||||| |||
Sbjct 316851 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTC 316792
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || | |||||| || || | ||||||
Sbjct 316791 TTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 316760
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | |||||| || ||||| || |||||||| || || | || || | |||||
Sbjct 316743 AGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCC 316684
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || || ||||| || || || ||||| || |||| || |||||||||
Sbjct 316683 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 316624
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| || ||||| || ||| || ||||| || ||||| |||
Sbjct 316623 TGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTC 316564
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || | |||||| || || | ||||||
Sbjct 316563 TTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 316532
>seq4863
Length=1240122
Score = 140 bits (154), Expect = 8e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || || ||||| || |||||||| || || | || || | |||||
Sbjct 1064090 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 1064031
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| || || || || || || |||| || |||||||||
Sbjct 1064030 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 1063971
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||| || || ||||| || ||||| |||
Sbjct 1063970 TGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTC 1063911
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| || || || || | ||||||
Sbjct 1063910 TTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 1063879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159075647744465
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |