Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 125 5e-24
seq4863 107 1e-18
seq4810 102 6e-17
>seq4765
Length=3541379
Score = 125 bits (138), Expect = 5e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| ||||| || ||||||||||| || || |||||||| || || || |
Sbjct 2921629 AAGATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCG 2921570
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
|||||||| | |||| | ||| || ||| ||||||||||| | || ||||||
Sbjct 2921569 TCGGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 2921510
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| |||||| | || ||||| ||||| || |||||||| | ||||| | || ||
Sbjct 2921509 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 2921450
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819
||||| || || ||||| || || || || ||
Sbjct 2921449 AACATTCAGAAGGAGTCTACCTTGCACTTGGT 2921418
>seq4863
Length=1240122
Score = 107 bits (118), Expect = 1e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| ||||||||||| || || || ||||| || || || || | ||
Sbjct 1063879 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCTTCG 1063938
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | ||||| || || | || ||||||||
Sbjct 1063939 GACACCATCGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 1063997
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || ||||||||||| || ||||| || | |||||| | ||| |||||
Sbjct 1063998 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAA 1064057
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 1064058 CATCCAGAAGGAGTCGAC 1064075
>seq4810
Length=1195048
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || | || || || || ||||| || || || || || |
Sbjct 316760 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 316819
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || || ||||| || || | || ||||| ||
Sbjct 316820 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 316879
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || |||||||| || || ||||| |||| |||||| || ||||||||||
Sbjct 316880 CAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAAC 316939
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819
|| || || |||||||| || ||||| ||
Sbjct 316940 ATCCAGAAGGAGTCCACTTTGCATTTGGT 316968
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| ||||| || ||||| || || | || || || || ||||| || || || || ||
Sbjct 316301 AACATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATCACCCTTGAGGTCGAGCCC 316360
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| | || | | || || || ||||| || || | || |||||
Sbjct 316361 TCCGACACAATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGAC 316420
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| |||||| | || |||||||| || || ||||| |||| |||||| | |||||||
Sbjct 316421 CAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGATTAC 316480
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||||| || || |||||||| | || || ||| | | |||| |||||
Sbjct 316481 AACATCCAGAAGGAGTCCACCCTTCACTTGGTTCTGCGTCTGCGTGGAGG 316530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337988421691628
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |