Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4810 143 6e-29 seq4644 127 5e-24 seq2795 127 5e-24 seq4863 125 2e-23 seq3752 116 9e-21 seq4765 107 5e-18 seq4953 105 2e-17 seq16 104 6e-17 >seq4810 Length=1195048 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| | || | |||||| || || |||| |||||||||| ||| || Sbjct 316981 ACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGT 316922 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || || ||||| || || || ||||| || ||||| || Sbjct 316921 GCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCC 316862 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || ||||||||||| |||| || || || | Sbjct 316861 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGGCTCGACCTCAAG 316802 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| |||||||| || | ||| | ||||| Sbjct 316801 GGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 316760 >seq4644 Length=1132839 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| ||||| || || |||| ||||| |||| | || | || ||| Sbjct 752291 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCT 752232 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| | || || || || || || || || |||||||| Sbjct 752231 TCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCC 752172 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || |||||||| || | ||||| || || ||||| ||| Sbjct 752171 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTC 752112 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || | ||| || | ||| | |||||| Sbjct 752111 TTTCCGGTAAGAGTCTTCACGAAGATCTGCATT 752079 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||||||||| || || || |||| ||||| |||| | || | || || Sbjct 752747 AGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCC 752688 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | || || || || || || || || ||||||||| Sbjct 752687 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGTATTCCCTCCTTGTCT 752628 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||| || |||||||| || | ||||| || | ||||| ||| Sbjct 752627 TGGATTTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTC 752568 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || |||| || || | || | |||||| Sbjct 752567 TTTCCAGTCAGGGTCTTCACAAAGATCTGCATT 752535 >seq2795 Length=1138 Score = 127 bits (140), Expect = 5e-24 Identities = 129/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || |||||| | || || ||||| ||| |||| ||||| || || ||||| Sbjct 807 CAAATTTATAATGTTATTGTAACAGCCCATGCTTTTATTATAATTTTTTTATTAGTTATA 866 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| ||||| ||||| | || || |||||| Sbjct 867 CCAATTATAATTGGAGGATTTGGAAATTGATTAGTTCCCTTAATATTAGGAGCCCCTGAT 926 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 || || ||||| | | || |||||||| ||||||||||| || ||| Sbjct 927 ATAGCATTTCCTCGAATAAATAATATAAGATTTTGATTACTTCCTCCT 974 >seq4863 Length=1240122 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || |||| ||||| |||| || ||| | ||||| Sbjct 1064090 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 1064031 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || || || || ||||| || |||||||| Sbjct 1064030 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 1063971 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || | ||||| || | ||||| ||| Sbjct 1063970 TGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTC 1063911 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||||| | ||| | ||||| Sbjct 1063910 TTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 1063879 >seq3752 Length=1418 Score = 116 bits (128), Expect = 9e-21 Identities = 123/161 (76%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || |||||| | || || ||||| ||| |||| ||||| ||| | ||||| Sbjct 1208 CAAATTTATAATGTTATTGTAACAGCCCATGCTTTTATTATAATTTT-TTTATAGTTATA 1150 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || | || || ||||||||||| ||| ||||||| || ||||||||| Sbjct 1149 CCAATTATAATTGAAGGATTTGGAAATTGATTAGTTATTTTAATGTGAGGAGCTCCTGAT 1090 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACT 7712 || || ||||| | | || |||||||| ||||||||||| Sbjct 1089 ATAGCATTTCCTCGAATAAATAATATAAGATTTTGATTACT 1049 Score = 98.7 bits (108), Expect = 2e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| |||||||||||||| ||||||||||| || | ||||| || ||||| || | Sbjct 637 TTCAGGGTGACCAAAAAATCAAAATAAATGTTGGTATAAAATAGGGTCTCCTCCTCCAGC 696 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||||||||||| |||||| ||||| | |||||||| Sbjct 697 TGGATCAAAAAATGAAGTATTTAAATTACGGTCAGTTAA 735 >seq4765 Length=3541379 Score = 107 bits (118), Expect = 5e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| |||||||| ||||| ||||| || || || || || || ||||| ||||| Sbjct 2921469 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCT 2921528 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || ||||| || ||| |||||| ||||| || | ||| || || | ||| Sbjct 2921529 TTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTG 2921588 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATG 225719 || ||||||||||| | || || | ||| | ||||| || || Sbjct 2921589 ATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATCTTGTG 2921632 >seq4953 Length=802672 Score = 105 bits (116), Expect = 2e-17 Identities = 101/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| |||| ||| ||||||||||||| ||||||||||| | | | Sbjct 786148 TGGTAAGGTTCTTCGCGTAGCATCGAATTAAACCACATGCTCCACCGCTTGTGC-GGGTC 786090 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854 |||||| || |||||||||| ||||||||||||||| | | |||| ||| | || | || Sbjct 786089 CCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGAGTGCTTAATGC 786030 Query 7855 GTTAGCT 7861 ||||||| Sbjct 786029 GTTAGCT 786023 Score = 104 bits (114), Expect = 6e-17 Identities = 100/127 (79%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| |||| ||| ||||||||||||| ||||||||||| | | Sbjct 623 TGGTAAGGTTCTTCGCGTAGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCC 682 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854 |||||| || |||||||||| ||||||||||||||| | | |||| ||| | || | || Sbjct 683 CCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGAGTGCTTAATGC 742 Query 7855 GTTAGCT 7861 ||||||| Sbjct 743 GTTAGCT 749 >seq16 Length=193047 Score = 104 bits (114), Expect = 6e-17 Identities = 100/127 (79%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| |||| ||| ||||||||||||| ||||||||||| | | Sbjct 622 TGGTAAGGTTCTTCGCGTAGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCC 681 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854 |||||| || |||||||||| ||||||||||||||| | | |||| ||| | || | || Sbjct 682 CCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGAGTGCTTAATGC 741 Query 7855 GTTAGCT 7861 ||||||| Sbjct 742 GTTAGCT 748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192452649087854