Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq4810 143 6e-29
seq4644 127 5e-24
seq2795 127 5e-24
seq4863 125 2e-23
seq3752 116 9e-21
seq4765 107 5e-18
seq4953 105 2e-17
seq16 104 6e-17
>seq4810
Length=1195048
Score = 143 bits (158), Expect = 6e-29
Identities = 165/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | |||||| | || | |||||| || || |||| |||||||||| ||| ||
Sbjct 316981 ACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGT 316922
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| || || ||||| || || || ||||| || ||||| ||
Sbjct 316921 GCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCC 316862
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| || ||||||||||| |||| || || || |
Sbjct 316861 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGGCTCGACCTCAAG 316802
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||||||| |||||||| || | ||| | |||||
Sbjct 316801 GGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 316760
>seq4644
Length=1132839
Score = 127 bits (140), Expect = 5e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | |||||| ||||| || || |||| ||||| |||| | || | || |||
Sbjct 752291 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCT 752232
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| | || || || || || || || || ||||||||
Sbjct 752231 TCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCC 752172
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||||| || |||||||| || | ||||| || || ||||| |||
Sbjct 752171 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTC 752112
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|| || || | ||| || | ||| | ||||||
Sbjct 752111 TTTCCGGTAAGAGTCTTCACGAAGATCTGCATT 752079
Score = 109 bits (120), Expect = 1e-18
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||||||||| || || || |||| ||||| |||| | || | || ||
Sbjct 752747 AGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCC 752688
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| | || || || || || || || || |||||||||
Sbjct 752687 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGTATTCCCTCCTTGTCT 752628
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
||||| || ||||||| || |||||||| || | ||||| || | ||||| |||
Sbjct 752627 TGGATTTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTC 752568
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|| || |||| || || | || | ||||||
Sbjct 752567 TTTCCAGTCAGGGTCTTCACAAAGATCTGCATT 752535
>seq2795
Length=1138
Score = 127 bits (140), Expect = 5e-24
Identities = 129/168 (77%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611
||| |||| || |||||| | || || ||||| ||| |||| ||||| || || |||||
Sbjct 807 CAAATTTATAATGTTATTGTAACAGCCCATGCTTTTATTATAATTTTTTTATTAGTTATA 866
Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671
|| |||| || || || || ||||||||||| ||||| ||||| | || || ||||||
Sbjct 867 CCAATTATAATTGGAGGATTTGGAAATTGATTAGTTCCCTTAATATTAGGAGCCCCTGAT 926
Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719
|| || ||||| | | || |||||||| ||||||||||| || |||
Sbjct 927 ATAGCATTTCCTCGAATAAATAATATAAGATTTTGATTACTTCCTCCT 974
>seq4863
Length=1240122
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| || || || || || |||| ||||| |||| || ||| | |||||
Sbjct 1064090 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 1064031
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || || ||||| || || || || || || ||||| || ||||||||
Sbjct 1064030 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 1063971
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| || | ||||| || | ||||| |||
Sbjct 1063970 TGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTC 1063911
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | ||||| | ||| | |||||
Sbjct 1063910 TTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 1063879
>seq3752
Length=1418
Score = 116 bits (128), Expect = 9e-21
Identities = 123/161 (76%), Gaps = 1/161 (1%)
Strand=Plus/Minus
Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611
||| |||| || |||||| | || || ||||| ||| |||| ||||| ||| | |||||
Sbjct 1208 CAAATTTATAATGTTATTGTAACAGCCCATGCTTTTATTATAATTTT-TTTATAGTTATA 1150
Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671
|| |||| || | || || ||||||||||| ||| ||||||| || |||||||||
Sbjct 1149 CCAATTATAATTGAAGGATTTGGAAATTGATTAGTTATTTTAATGTGAGGAGCTCCTGAT 1090
Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACT 7712
|| || ||||| | | || |||||||| |||||||||||
Sbjct 1089 ATAGCATTTCCTCGAATAAATAATATAAGATTTTGATTACT 1049
Score = 98.7 bits (108), Expect = 2e-15
Identities = 81/99 (82%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
|||||| |||||||||||||| ||||||||||| || | ||||| || ||||| || |
Sbjct 637 TTCAGGGTGACCAAAAAATCAAAATAAATGTTGGTATAAAATAGGGTCTCCTCCTCCAGC 696
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
|||||||||||| |||||| ||||| | ||||||||
Sbjct 697 TGGATCAAAAAATGAAGTATTTAAATTACGGTCAGTTAA 735
>seq4765
Length=3541379
Score = 107 bits (118), Expect = 5e-18
Identities = 122/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
|||||||| |||||||| ||||| ||||| || || || || || || ||||| |||||
Sbjct 2921469 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCT 2921528
Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675
||||| || ||||| || ||| |||||| ||||| || | ||| || || | |||
Sbjct 2921529 TTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTG 2921588
Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATG 225719
|| ||||||||||| | || || | ||| | ||||| || ||
Sbjct 2921589 ATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATCTTGTG 2921632
>seq4953
Length=802672
Score = 105 bits (116), Expect = 2e-17
Identities = 101/127 (80%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795
||||||| ||||| |||| ||| ||||||||||||| ||||||||||| | | |
Sbjct 786148 TGGTAAGGTTCTTCGCGTAGCATCGAATTAAACCACATGCTCCACCGCTTGTGC-GGGTC 786090
Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854
|||||| || |||||||||| ||||||||||||||| | | |||| ||| | || | ||
Sbjct 786089 CCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGAGTGCTTAATGC 786030
Query 7855 GTTAGCT 7861
|||||||
Sbjct 786029 GTTAGCT 786023
Score = 104 bits (114), Expect = 6e-17
Identities = 100/127 (79%), Gaps = 1/127 (1%)
Strand=Plus/Plus
Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795
||||||| ||||| |||| ||| ||||||||||||| ||||||||||| | |
Sbjct 623 TGGTAAGGTTCTTCGCGTAGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCC 682
Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854
|||||| || |||||||||| ||||||||||||||| | | |||| ||| | || | ||
Sbjct 683 CCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGAGTGCTTAATGC 742
Query 7855 GTTAGCT 7861
|||||||
Sbjct 743 GTTAGCT 749
>seq16
Length=193047
Score = 104 bits (114), Expect = 6e-17
Identities = 100/127 (79%), Gaps = 1/127 (1%)
Strand=Plus/Plus
Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795
||||||| ||||| |||| ||| ||||||||||||| ||||||||||| | |
Sbjct 622 TGGTAAGGTTCTTCGCGTAGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCC 681
Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854
|||||| || |||||||||| ||||||||||||||| | | |||| ||| | || | ||
Sbjct 682 CCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGAGTGCTTAATGC 741
Query 7855 GTTAGCT 7861
|||||||
Sbjct 742 GTTAGCT 748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192452649087854
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