Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq4761 176 3e-39 >seq4761 Length=1439414 Score = 176 bits (194), Expect = 3e-39 Identities = 447/673 (66%), Gaps = 14/673 (2%) Strand=Plus/Plus Query 27063 AAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTC 27122 |||||| || | | || |||| | | || ||| ||| ||||||| || | || Sbjct 1350148 AAAGTCCTCAATGTCCTGCACCTTGCGCTTGATCACCAGCTTGGGAAACGGACGCGGAGT 1350207 Query 27123 CCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAG 27182 | || ||||| ||||||||| ||||| |||| |||||||| |||||||| |||| Sbjct 1350208 GCGCTGCAGCTGCTCCTTCAGCGGATCCACATGATTTAGGTAGACATGAGCGTCGCCCAT 1350267 Query 27183 GGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAG 27242 ||| || ||||| || || || | || || || || || || ||||||| || || || Sbjct 1350268 GGTATGAACAAAGTCACCAGGCTTCAGACCTGTCACATGGGCTATCATGTGGGTAAGCAG 1350327 Query 27243 AGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAG 27302 | ||| ||||||||| || || || || || |||||||| | ||||||||| || Sbjct 1350328 GGCGTAAGAGGCGATGTTGAATGGCACGCCCAGACCCATGTCAGCGCTCCTCTGGTACAG 1350387 Query 27303 CTGACACGAGAGCTCTCCATCG--CT----TACGTAAAACTGACATATGGCGTGGCACGG 27356 |||||| || | ||| ||| | || |||| | ||||| | | ||| || || Sbjct 1350388 CTGACAGGACAACTCGCCACGGTCCTGGGATACGAAGAACTGCGCCAGGCAGTGACATGG 1350447 Query 27357 AGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC 27416 || || ||||| | || ||| ||||| ||| ||| ||||||||||||||| Sbjct 1350448 CGGCAGCGCCATCTTTGGTATATCCAGGGGATTCCATGCGGACATGATGATGCGCCTGTC 1350507 Query 27417 TTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA 27476 || |||||| | || || | | | ||||||| || | ||| || Sbjct 1350508 CGACGGATTGTTCTTTATCGTCTCGATCACCTGACGCAGCTGGTCGATGCCCTGGCCGCT 1350567 Query 27477 GTAGTC-TACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACA 27535 |||||| | | || || || |||||||| || || |||| ||| ||||| ||||| | Sbjct 1350568 GTAGTCGTCGTCGCAGGTGCG-ATACTCTGCCCCAAAGTGCCGCCACTGGAAGCCGTATA 1350626 Query 27536 CCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGG 27595 |||| |||| ||||| || ||| | | | |||| |||||||| | || |||| Sbjct 1350627 CCGGGCCCAAATCTCCGACTGCCCGCTCCGTGTGGCCCAGCTTGTCCAGGTACTCCCTGG 1350686 Query 27596 AACCGTTGGCGTCCCAGATCTTTACCCCCTT--CTCGGAG-AGCTCTTTGGAGTTTGTGG 27652 | ||| | ||||| || | || || || |||| ||| |||| || || Sbjct 1350687 TGCTGTTCCCATCCCATATGTGCACGTTTTTGGCTTGGAGAAGC---TTGGCGTCCGTCT 1350743 Query 27653 ACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCG 27712 || ||| ||||| || |||||||| | ||||| | ||||| | |||||| | Sbjct 1350744 TACCAGCGACAAACCAAAGTAGCTCCTCGGCCACGGCGCGGAAGAAGACACGCTTGGTGG 1350803 Query 27713 TGAGGAGGGGAAA 27725 | || |||||||| Sbjct 1350804 TCAGCAGGGGAAA 1350816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369484048179971