Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq4761 176 3e-39
>seq4761
Length=1439414
Score = 176 bits (194), Expect = 3e-39
Identities = 447/673 (66%), Gaps = 14/673 (2%)
Strand=Plus/Plus
Query 27063 AAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTC 27122
|||||| || | | || |||| | | || ||| ||| ||||||| || | ||
Sbjct 1350148 AAAGTCCTCAATGTCCTGCACCTTGCGCTTGATCACCAGCTTGGGAAACGGACGCGGAGT 1350207
Query 27123 CCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAG 27182
| || ||||| ||||||||| ||||| |||| |||||||| |||||||| ||||
Sbjct 1350208 GCGCTGCAGCTGCTCCTTCAGCGGATCCACATGATTTAGGTAGACATGAGCGTCGCCCAT 1350267
Query 27183 GGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAG 27242
||| || ||||| || || || | || || || || || || ||||||| || || ||
Sbjct 1350268 GGTATGAACAAAGTCACCAGGCTTCAGACCTGTCACATGGGCTATCATGTGGGTAAGCAG 1350327
Query 27243 AGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAG 27302
| ||| ||||||||| || || || || || |||||||| | ||||||||| ||
Sbjct 1350328 GGCGTAAGAGGCGATGTTGAATGGCACGCCCAGACCCATGTCAGCGCTCCTCTGGTACAG 1350387
Query 27303 CTGACACGAGAGCTCTCCATCG--CT----TACGTAAAACTGACATATGGCGTGGCACGG 27356
|||||| || | ||| ||| | || |||| | ||||| | | ||| || ||
Sbjct 1350388 CTGACAGGACAACTCGCCACGGTCCTGGGATACGAAGAACTGCGCCAGGCAGTGACATGG 1350447
Query 27357 AGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC 27416
|| || ||||| | || ||| ||||| ||| ||| |||||||||||||||
Sbjct 1350448 CGGCAGCGCCATCTTTGGTATATCCAGGGGATTCCATGCGGACATGATGATGCGCCTGTC 1350507
Query 27417 TTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA 27476
|| |||||| | || || | | | ||||||| || | ||| ||
Sbjct 1350508 CGACGGATTGTTCTTTATCGTCTCGATCACCTGACGCAGCTGGTCGATGCCCTGGCCGCT 1350567
Query 27477 GTAGTC-TACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACA 27535
|||||| | | || || || |||||||| || || |||| ||| ||||| ||||| |
Sbjct 1350568 GTAGTCGTCGTCGCAGGTGCG-ATACTCTGCCCCAAAGTGCCGCCACTGGAAGCCGTATA 1350626
Query 27536 CCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGG 27595
|||| |||| ||||| || ||| | | | |||| |||||||| | || ||||
Sbjct 1350627 CCGGGCCCAAATCTCCGACTGCCCGCTCCGTGTGGCCCAGCTTGTCCAGGTACTCCCTGG 1350686
Query 27596 AACCGTTGGCGTCCCAGATCTTTACCCCCTT--CTCGGAG-AGCTCTTTGGAGTTTGTGG 27652
| ||| | ||||| || | || || || |||| ||| |||| || ||
Sbjct 1350687 TGCTGTTCCCATCCCATATGTGCACGTTTTTGGCTTGGAGAAGC---TTGGCGTCCGTCT 1350743
Query 27653 ACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCG 27712
|| ||| ||||| || |||||||| | ||||| | ||||| | |||||| |
Sbjct 1350744 TACCAGCGACAAACCAAAGTAGCTCCTCGGCCACGGCGCGGAAGAAGACACGCTTGGTGG 1350803
Query 27713 TGAGGAGGGGAAA 27725
| || ||||||||
Sbjct 1350804 TCAGCAGGGGAAA 1350816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369484048179971
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |