Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_030931.1 Length=41871 Score E Sequences producing significant alignments: (Bits) Value seq4583 120 8e-23 >seq4583 Length=779074 Score = 120 bits (132), Expect = 8e-23 Identities = 258/380 (68%), Gaps = 7/380 (2%) Strand=Plus/Plus Query 27277 CTGCGCCTGGCGATGCTGCAGGCCCAGCTGGCGCGCCTGCCGGCATCCGGCCACGTTCTG 27336 ||||| ||||| ||| ||||| || |||||| |||||| | || ||| ||||| Sbjct 71925 CTGCGGCTGGCTATGTTGCAGACCACGCTGGCAGAATACCCGGCAACAGGGCACATTCTG 71984 Query 27337 CACTTCATCGACTGGGCGAAGATCGAGCTGACCAAGGACACCCTGGGCCGCTACATCCTC 27396 || | |||||||| | || || |||||||||||| || |||| || | || Sbjct 71985 AACCCAACTGACTGGGCCAGCATTGAACTGACCAAGGACGGTGTGAGCCGGTATGTGTTC 72044 Query 27397 GCCAACCCGCTGGGCCTGGCCGGCCCGCTGCTGTGGGGCCTGCCGGTGGTTGCCACTGAA 27456 ||||| || ||||| |||| |||||| | |||||||||||||| || | || || Sbjct 72045 GCCAATCCTATGGGCATGGCTGGCCCGGTTCTGTGGGGCCTGCCTGTAGCTGAATCT--- 72101 Query 27457 ATCGCCGCGTTCCAGGGCAAGTTCCTGACTGGTGCGTTCCAGACCGGC-GCGCAGATCTT 27515 | ||| | |||||||||||| |||| || || || ||| | || |||||| | || Sbjct 72102 CTGGCCATGGCGCAGGGCAAGTTCATGACCGGGGCCTT-CAGCCTTGCGGCGCAGCTGTT 72160 Query 27516 CGATCGCGAAGACGCCAACGTGGTGATCTCCACCGAGAACGCCGACGACTTCGAGAAGAA 27575 || || || ||||| | || || |||||||| || || |||||| || Sbjct 72161 TGACCGTGAGGACGCTACAGTCTCCATTTCCACCGAAGACCGGGATAACTTCGTAAAAGG 72220 Query 27576 CATGATCTCGATCCGTTGC-GAAGAGCGCCTGGCGCTGGCCGTGAAGCGCCCCGAGGCGT 27634 |||| | | || | | || ||||||||| |||||| || | || || |||| Sbjct 72221 CATGGTGACCATTC-TGGCGGAAGAGCGCACAACGCTGGTTGTTTACCGTCCGCAGGCCA 72279 Query 27635 TCATCTACGGCACCTTCACC 27654 | ||| ||||| ||||||| Sbjct 72280 TTATCAACGGCGACTTCACC 72299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133857427588786