Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 300 2e-76
>seq4765
Length=3541379
Score = 300 bits (332), Expect = 2e-76
Identities = 969/1486 (65%), Gaps = 26/1486 (2%)
Strand=Plus/Minus
Query 76770 TTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATA 76829
||||| || | || ||||| || | | | || || || || || || || |||||
Sbjct 3010803 TTCTTGTCGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATC 3010744
Query 76830 CCAGTTTTTAGACCCAGACT-CCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888
|| ||||| || || || || ||| ||| || || ||| |||||| ||| ||| |
Sbjct 3010743 CCGGTTTTAAGGCC-AGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTT 3010685
Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948
|| || || | |||||| || | ||| ||||| |||||||| || || || | ||| ||
Sbjct 3010684 GGGCTCAGCCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGC 3010625
Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008
|||||||| || ||| || || || ||||||| || ||| | | | | |
Sbjct 3010624 GGCCATTTTAATGGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACA---GATCGCG 3010568
Query 77009 ATCAT-CTGG---AAGGTTTG--TATTTTGAATGGAACCACCATCTGATATAATTGTATT 77062
| ||| |||| | || | |||| || || || |||| || || || ||
Sbjct 3010567 AACATTCTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTT 3010508
Query 77063 CTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAAC 77122
||| || ||||||| |||||| | | ||| |||| | | | | || ||| | || ||
Sbjct 3010507 CTTCATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGAC 3010448
Query 77123 TATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCAC 77182
| || ||||| || || | || | || || || ||||| |||| || || || |
Sbjct 3010447 CACCTGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAA 3010388
Query 77183 AGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAA 77242
||||| ||||| |||| || || ||||| || || || ||||| || ||||| | |
Sbjct 3010387 GGATTCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAG 3010328
Query 77243 ACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATC 77302
| ||||| | || ||| | |||| || || || | | ||| ||||| || |
Sbjct 3010327 AGAGTTTCTAACGCCGTGTTTCTTGATCGATTCCTTCAGCTTTGCCCAGTCCCAGAGGTT 3010268
Query 77303 TGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATT 77362
| ||||| ||||| | ||||| || || ||||| || || | || |
Sbjct 3010267 CGTGGGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTC 3010208
Query 77363 ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422
|| |||||||| || ||||| | || ||||||||||| ||||||| ||||| ||
Sbjct 3010207 GTAGGTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATA 3010148
Query 77423 ATAAATTGTTTCGAAAATCTTCTTATT---GAGATCTTGTGCTTCAATACTATCAAACGG 77479
||| || ||||| || |||| | ||| |||| | || || || || | ||
Sbjct 3010147 ATATATCGTTTCAAAGATCTGTTGATTCAGGAGACC---CGCCTCCTCGCTTTCGTA-GG 3010092
Query 77480 ATAATGT-AAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTAT 77538
||| | | ||||| |||||||| || | ||||||||| ||||| ||||| || | ||
Sbjct 3010091 GGAATCTCATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGAT 3010032
Query 77539 GTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTAT 77598
| ||| |||| || | | || || || | |||||||| || ||||| ||||| || |
Sbjct 3010031 GCCTCATATTCGATTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGT 3009972
Query 77599 TGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATC--AAATC-TTC 77655
| ||||| | | || || || ||||| || || |||||| | || ||
Sbjct 3009971 TCAGATTCTTGGCCACAGTCTTGGTGACCTCCTTCAGCTTCTTAAAATCGTACGTCTTTT 3009912
Query 77656 CATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAG 77715
| | ||||||||||| | ||| || || || || || || || || | ||| | |
Sbjct 3009911 CGGGCGTCACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGTCGG 3009852
Query 77716 CGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTT 77775
|| || | | || || || || ||||| || || ||||| ||||||| ||| |
Sbjct 3009851 GCGAGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATTCT 3009792
Query 77776 GTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAA 77835
| || |||||||| | ||||| | ||||| | || || ||||| | || || || |
Sbjct 3009791 GCTGATTGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCA 3009732
Query 77836 TCTGTGATTCGATAATAGATTTCCAGA-CGACTCTAGCTTTTA-TCATAGATTTGTATCG 77893
||| | ||||| || | ||| | |||| ||| || | | |||| | |
Sbjct 3009731 CCTGCGCCTCGATGATGGCGAACCACAGGGACT-GAGCCTTAACTGTCCGATTGGCCTTT 3009673
Query 77894 CCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAA 77953
|| ||| || |||| | || ||| ||||| || || ||||| ||||| | ||
Sbjct 3009672 CC-CTCGGCCTCGTATTTAAGGTACAGCTTCTCAAACTCGTCGCCCCACACATCCTGCAG 3009614
Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCAT 78013
|| || || | | |||||||| | ||||||| ||| ||| || || |||||
Sbjct 3009613 GCCGGGACACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGCGCTTCAT 3009554
Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073
||||||||| |||||||| || ||| |||||||| || | | || || || || ||
Sbjct 3009553 AAAGAGATCGGGTATCCAGAGGGCATAGAATAGATCGCGAGCACGATTCTCCTCCTTGCC 3009494
Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133
|| |||||||| || || | ||||| | | ||| || ||||| || || | ||| ||
Sbjct 3009493 GGTGTTCTTTTTCAGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCCAAATAGAT 3009434
Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193
|| | | || || || || || ||||| || | || | || || || |
Sbjct 3009433 GGCAAAGGCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACATTGTTGAA 3009374
Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCA 78239
|||| || ||| |||| | || || || || |||||||| |||
Sbjct 3009373 GACTCGCAGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCCA 3009328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694624158846240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |