Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4765 300 2e-76 >seq4765 Length=3541379 Score = 300 bits (332), Expect = 2e-76 Identities = 969/1486 (65%), Gaps = 26/1486 (2%) Strand=Plus/Minus Query 76770 TTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATA 76829 ||||| || | || ||||| || | | | || || || || || || || ||||| Sbjct 3010803 TTCTTGTCGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATC 3010744 Query 76830 CCAGTTTTTAGACCCAGACT-CCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888 || ||||| || || || || ||| ||| || || ||| |||||| ||| ||| | Sbjct 3010743 CCGGTTTTAAGGCC-AGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTT 3010685 Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948 || || || | |||||| || | ||| ||||| |||||||| || || || | ||| || Sbjct 3010684 GGGCTCAGCCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGC 3010625 Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008 |||||||| || ||| || || || ||||||| || ||| | | | | | Sbjct 3010624 GGCCATTTTAATGGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACA---GATCGCG 3010568 Query 77009 ATCAT-CTGG---AAGGTTTG--TATTTTGAATGGAACCACCATCTGATATAATTGTATT 77062 | ||| |||| | || | |||| || || || |||| || || || || Sbjct 3010567 AACATTCTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTT 3010508 Query 77063 CTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAAC 77122 ||| || ||||||| |||||| | | ||| |||| | | | | || ||| | || || Sbjct 3010507 CTTCATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGAC 3010448 Query 77123 TATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCAC 77182 | || ||||| || || | || | || || || ||||| |||| || || || | Sbjct 3010447 CACCTGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAA 3010388 Query 77183 AGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAA 77242 ||||| ||||| |||| || || ||||| || || || ||||| || ||||| | | Sbjct 3010387 GGATTCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAG 3010328 Query 77243 ACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATC 77302 | ||||| | || ||| | |||| || || || | | ||| ||||| || | Sbjct 3010327 AGAGTTTCTAACGCCGTGTTTCTTGATCGATTCCTTCAGCTTTGCCCAGTCCCAGAGGTT 3010268 Query 77303 TGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATT 77362 | ||||| ||||| | ||||| || || ||||| || || | || | Sbjct 3010267 CGTGGGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTC 3010208 Query 77363 ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422 || |||||||| || ||||| | || ||||||||||| ||||||| ||||| || Sbjct 3010207 GTAGGTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATA 3010148 Query 77423 ATAAATTGTTTCGAAAATCTTCTTATT---GAGATCTTGTGCTTCAATACTATCAAACGG 77479 ||| || ||||| || |||| | ||| |||| | || || || || | || Sbjct 3010147 ATATATCGTTTCAAAGATCTGTTGATTCAGGAGACC---CGCCTCCTCGCTTTCGTA-GG 3010092 Query 77480 ATAATGT-AAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTAT 77538 ||| | | ||||| |||||||| || | ||||||||| ||||| ||||| || | || Sbjct 3010091 GGAATCTCATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGAT 3010032 Query 77539 GTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTAT 77598 | ||| |||| || | | || || || | |||||||| || ||||| ||||| || | Sbjct 3010031 GCCTCATATTCGATTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGT 3009972 Query 77599 TGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATC--AAATC-TTC 77655 | ||||| | | || || || ||||| || || |||||| | || || Sbjct 3009971 TCAGATTCTTGGCCACAGTCTTGGTGACCTCCTTCAGCTTCTTAAAATCGTACGTCTTTT 3009912 Query 77656 CATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAG 77715 | | ||||||||||| | ||| || || || || || || || || | ||| | | Sbjct 3009911 CGGGCGTCACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGTCGG 3009852 Query 77716 CGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTT 77775 || || | | || || || || ||||| || || ||||| ||||||| ||| | Sbjct 3009851 GCGAGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATTCT 3009792 Query 77776 GTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAA 77835 | || |||||||| | ||||| | ||||| | || || ||||| | || || || | Sbjct 3009791 GCTGATTGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCA 3009732 Query 77836 TCTGTGATTCGATAATAGATTTCCAGA-CGACTCTAGCTTTTA-TCATAGATTTGTATCG 77893 ||| | ||||| || | ||| | |||| ||| || | | |||| | | Sbjct 3009731 CCTGCGCCTCGATGATGGCGAACCACAGGGACT-GAGCCTTAACTGTCCGATTGGCCTTT 3009673 Query 77894 CCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAA 77953 || ||| || |||| | || ||| ||||| || || ||||| ||||| | || Sbjct 3009672 CC-CTCGGCCTCGTATTTAAGGTACAGCTTCTCAAACTCGTCGCCCCACACATCCTGCAG 3009614 Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCAT 78013 || || || | | |||||||| | ||||||| ||| ||| || || ||||| Sbjct 3009613 GCCGGGACACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGCGCTTCAT 3009554 Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073 ||||||||| |||||||| || ||| |||||||| || | | || || || || || Sbjct 3009553 AAAGAGATCGGGTATCCAGAGGGCATAGAATAGATCGCGAGCACGATTCTCCTCCTTGCC 3009494 Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133 || |||||||| || || | ||||| | | ||| || ||||| || || | ||| || Sbjct 3009493 GGTGTTCTTTTTCAGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCCAAATAGAT 3009434 Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193 || | | || || || || || ||||| || | || | || || || | Sbjct 3009433 GGCAAAGGCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACATTGTTGAA 3009374 Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCA 78239 |||| || ||| |||| | || || || || |||||||| ||| Sbjct 3009373 GACTCGCAGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCCA 3009328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694624158846240