Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4765 309 4e-79 >seq4765 Length=3541379 Score = 309 bits (342), Expect = 4e-79 Identities = 1204/1874 (64%), Gaps = 30/1874 (2%) Strand=Plus/Minus Query 75365 TTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATA 75424 ||||| || | |||||||| |||| | || || || || || || || || ||||| Sbjct 3010803 TTCTTGTCGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATC 3010744 Query 75425 CCAGTTTTTAGACCCAGACT-CCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483 || ||||| || || || || ||| ||| || || ||| ||| || ||| ||| | Sbjct 3010743 CCGGTTTTAAGGCC-AGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTT 3010685 Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543 || || || | |||||| || | ||| ||||| |||||||| || || || | ||| || Sbjct 3010684 GGGCTCAGCCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGC 3010625 Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603 |||||||| || ||| || || || ||||||| || ||| | | | | | Sbjct 3010624 GGCCATTTTAATGGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACA---GATCGCG 3010568 Query 75604 ATCAT-CTGGAAGAT----TTG-TATTTTGAATGGATCCGCCATCAGATATAATTGTATT 75657 | ||| |||| || | | |||| || || || || | || || || || Sbjct 3010567 AACATTCTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTT 3010508 Query 75658 CTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAAC 75717 ||| || ||||||| |||||| | ||| |||| | | | | || ||| | || || Sbjct 3010507 CTTCATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGAC 3010448 Query 75718 AATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCAC 75777 | || ||||| || || | || | || || || ||||| |||| || || || | Sbjct 3010447 CACCTGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAA 3010388 Query 75778 AGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAA 75837 ||||| ||||| |||| || || ||||| || || || ||||| || ||||| | | Sbjct 3010387 GGATTCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAG 3010328 Query 75838 ACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATC 75897 | ||||| | || ||| | |||| || || || | | ||| ||||| || | Sbjct 3010327 AGAGTTTCTAACGCCGTGTTTCTTGATCGATTCCTTCAGCTTTGCCCAGTCCCAGAGGTT 3010268 Query 75898 TGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATT 75957 | ||||| ||||| | ||||| || || ||||| ||||| | || | Sbjct 3010267 CGTGGGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTC 3010208 Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 || ||||| || | || || | || ||||| ||||| || || | || || || Sbjct 3010207 GTAGGTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATA 3010148 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 ||| || ||||| || |||| | ||| || ||| || || || | || | Sbjct 3010147 ATATATCGTTTCAAAGATCTGTTGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGGG-A 3010089 Query 76078 ATGTAAA-AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTC 76136 || | | ||||| || ||||| || ||||||||||| ||||| ||||| || | ||| | Sbjct 3010088 ATCTCATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCC 3010029 Query 76137 TCTTATTGGAAATTTC--AGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATT 76194 || |||| | ||||| || || || | || ||||| || || || ||||| || || Sbjct 3010028 TCATATTCG--ATTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGTT 3009971 Query 76195 GAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA----TTTTC 76250 ||||| || | || || || ||||| || || |||||| | ||||| Sbjct 3009970 CAGATTCTTGGCCACAGTCTTGGTGACCTCCTTCAGCTTCTTAAAATCGTACGTCTTTTC 3009911 Query 76251 CATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAG 76310 | |||||||||| || ||||| || || || || || || ||||| | ||| | | Sbjct 3009910 GGGC-GTCACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGTCGG 3009852 Query 76311 CATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTT 76370 || || | | || || ||||| ||||| || |||||||| || || | ||| | Sbjct 3009851 GCGAGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATTCT 3009792 Query 76371 GTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAA 76430 | || |||||||| |||| || | ||||| | || | ||||| | ||||| || | Sbjct 3009791 GCTGATTGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCA 3009732 Query 76431 TCTGTGATTCGATAATAGATTTCCAGA-CGACTCTAGCTTTTATTAT-AGATTTGTATCG 76488 ||| | ||||| || | ||| | |||| ||| || | | | |||| | | Sbjct 3009731 CCTGCGCCTCGATGATGGCGAACCACAGGGACT-GAGCCTTAACTGTCCGATTGG---CC 3009676 Query 76489 CTTCTCTC--TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCC 76546 ||| ||| || |||| || | | ||||| || || ||||| ||||| | | Sbjct 3009675 TTTCCCTCGGCCTCGTATTTAAGGTACAGCTTCTCAAACTCGTCGCCCCACACATCCTGC 3009616 Query 76547 AAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTC 76606 | || ||||| | | ||| ||||| | ||||| | ||| ||| || || ||| Sbjct 3009615 AGGCCGGGACACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGCGCTTC 3009556 Query 76607 ATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTT 76666 ||||||||||| |||||||| || ||| |||||||| || | | | || || || Sbjct 3009555 ATAAAGAGATCGGGTATCCAGAGGGCATAGAATAGATCGCGAGCACGATTCTCCTCCTTG 3009496 Query 76667 CCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 76726 || || |||||||| || || | |||||| | | ||| || ||||| || || | ||| Sbjct 3009495 CCGGTGTTCTTTTTCAGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCCAAATAG 3009436 Query 76727 ATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTA 76786 || || | |||| || || || || ||||| || | || | || || || Sbjct 3009435 ATGGCAAAGGCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACATTGTTG 3009376 Query 76787 TAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTT 76846 | |||| || ||| |||| | ||| || || || |||||||| ||| | || || | Sbjct 3009375 AAGACTCGCAGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCCACATATGGAAGTG 3009316 Query 76847 CCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGA 76906 || ||||| || | | | ||||| || || || ||| || ||||| | Sbjct 3009315 CCCTTGGCACGGATGCAATGGACATTCAGGCCAATGCCGCCCGCCGACTTGGAGATCATG 3009256 Query 76907 GCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGA 76966 |||||| ||| || | | | | ||||| || || ||| ||||| | || || Sbjct 3009255 GCACAGTGTTCCACCGACTTAAAAATGCCTTCGATCGAATCCGATGTCATGGTCAGGAGG 3009196 Query 76967 AAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGA 77026 || ||| || | || | | || | || |||| || || || || || Sbjct 3009195 AAGCAGGACGAGAGCTGCGGCCGGTTCGTGGCAGCGGCGAACAGGGTGGGCGAGGCGTGT 3009136 Query 77027 GTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGA 77086 ||||| | || || | | ||||||||| || | | | || || || || | Sbjct 3009135 GTGAAGAAGCGCTCTGACAACAAATTGTATGTCTCCACAGCGGCATCGATGTCTTCACCA 3009076 Query 77087 TGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTT 77146 || ||||| | || || ||||||| ||| ||||| || || || || ||||| ||| Sbjct 3009075 TGGATTCCAATCGCCACGCGCATCAGCATGTGCTGCGGCCGCTCGGCAATCTTACCGTTT 3009016 Query 77147 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 77206 | |||| ||| || || |||| || || |||||||| || || || |||||| Sbjct 3009015 CTCTTCAGCAAATACGAACGCTCCAGGGTCTTGAAACCAAAGTAATTATACCCAAAGTCG 3008956 Query 77207 CTTTCGTAAATAAT 77220 | |||||||| || Sbjct 3008955 CGATCGTAAATTAT 3008942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712888585053120