Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_031039.1 Length=251042 Score E Sequences producing significant alignments: (Bits) Value seq4953 93.3 7e-14 >seq4953 Length=802672 Score = 93.3 bits (102), Expect = 7e-14 Identities = 199/292 (68%), Gaps = 8/292 (3%) Strand=Plus/Minus Query 192022 AAATTTATCAGGAACAATAATTCCAGTTGAAAGTGTTTTCATACGAATGCTATCGTCAGC 192081 ||||||||| || |||| | ||| |||||| || || | || || | ||||| || Sbjct 185692 AAATTTATCTGGCACAACCACACCAAGTGAAAGGGTGTTTACTCGGATTTTTTCGTCGGC 185633 Query 192082 ATTGAtttttttAGTATTTAGGAAATGAATAATATCCCCATGAAAAATATTAAGATAAAC 192141 || |||||| | ||| ||||| || || ||| |||| | |||||||||| Sbjct 185632 GTTTTCCTTTTTAACTCCCAAGAATTGAATGATGTCAGGATGGAAAACACTAAGATAAAC 185573 Query 192142 AGCTCCTGAGCCTTTGCGTTGACCCATCTGATCAGCATAAGAGAAACTTTGTTCCAATAA 192201 | | || | || || | ||| || | || | | ||| | |||||| | ||| | ||| Sbjct 185572 AACCCCAGCACCGTTTCTTTGGCCTAGTTGGTTGGAATAGGTGAAACTATCTTCTAGTAA 185513 Query 192202 TTTCATTACAGGAATAACACCTTTAGCGGCATTTTCTTCA--CCATTTACT-GGATCTCC 192258 |||||||| |||| |||||| | || || | ||| | |||| | ||||| || Sbjct 185512 CTTCATTACTGGAAGAACACCACTGGCTGC---TCCTTGAATGTGTTTAATGGGATCACC 185456 Query 192259 AAGCA-TTCTTAATTTAGAAACATTTGTTGAAACCCCTCCACCAATTTTAGA 192309 |||| ||||| ||||||| ||| || ||| |||||||||||||| || Sbjct 185455 -AGCAGCTCTTAGGTTAGAAAGATTAATTCCAACTCCTCCACCAATTTTGGA 185405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 803154783948720