Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq1772 147 6e-31 >seq1772 Length=1414 Score = 147 bits (162), Expect = 6e-31 Identities = 258/376 (69%), Gaps = 0/376 (0%) Strand=Plus/Plus Query 9295 AGCGGCGGCGCCGCTGGAGCCCAGAGCAAAAGCTGGCGATGGTTCGCGAGAGCCTTGAGC 9354 |||| || | ||||||||| | | ||| |||| ||||| | |||| | |||| Sbjct 18 AGCGCCGAAGGCGCTGGAGCTTGGCCGAGAAGATGGCCATGGTGAGGGAGACCTACGAGC 77 Query 9355 CAGGACACAGCGTTTCGGTGGTGGCCCGGCGCAACGGCGTCAATGCCAATCAACTATTTC 9414 | || ||||| || ||||||| || ||| ||||| ||||| |||| || || || | Sbjct 78 CCGGGATGAGCGTGTCCCTGGTGGCGCGCCGCCACGGCATCAATCCCAACCAGCTGTTCC 137 Query 9415 ACTGGCGCAAGCTTTACCAGGACGGAAGTTTGTCGGCGGTCAGCGCCGGTGAAGCCGTGG 9474 | ||||||||||| | ||| ||| ||| | || || ||||||| || | |||| Sbjct 138 AATGGCGCAAGCTGGAGAAGGTCGGTGCCTTGACCGCTGTTGGCGCCGGCGAGCCGGTGG 197 Query 9475 TGCCTGCGTCCGAGTTGAGCGATGCGCTCAGGCAGATTCGTGAGCTACAACGGATGCTGG 9534 |||| || ||| | || |||| || || || |||||| |||| |||| | Sbjct 198 TGCCGGCAGGCGAACTCGACGCAGCGCGCAAGCGCATCGCTGAGCTGGAACGCTTGCTCG 257 Query 9535 GCAAGAAGACGATGGAAGCCGAAGTCCTCAAAGAGGCCGTGGAGATAGCCCGCTCGCGAA 9594 | |||||| |||| ||| | ||||| || || |||||| | || ||| |||| Sbjct 258 GGCGCAAGACGCTGGAGAACGAGATTCTCAAGGAAGCGGTGGAGGTGGCGCGCGAACGAA 317 Query 9595 AATGGATTGCGCACTCACCCTTGTTGCCGGGGGACGGTCAGTGAAACTGGTCAGTGAATG 9654 | |||||||||| |||||||| |||||| ||||||| | ||||| | || | | Sbjct 318 AGTGGATTGCGCGCTCACCCTCGTTGCCCGGGGACGAGCTGTGAAGCCCGTTTGCCAGGC 377 Query 9655 TCTCGGTGTGGCGCGC 9670 || |||||||||||| Sbjct 378 CCTGGGTGTGGCGCGC 393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138356352915438