Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_031094.1 Length=33105 Score E Sequences producing significant alignments: (Bits) Value seq4953 104 5e-18 >seq4953 Length=802672 Score = 104 bits (114), Expect = 5e-18 Identities = 205/302 (68%), Gaps = 6/302 (2%) Strand=Plus/Minus Query 27368 ATGATTAATTCAACCGTACTTGTTGGACGTCTAACTAAAGACCCAGAACTTAAATACACA 27427 ||||||||| || || ||| |||||| |||| |||| || | |||||| Sbjct 673316 ATGATTAATACAGTAGTTCTTACTGGACGCTTAACACGAGACGTTGATTTGCGATACACC 673257 Query 27428 CAAAGCAATATCGC---AGTAGCATCTTTTAGCCTTGCGGTTAACCGTAACTTTAAGGAT 27484 |||| || ||| ||| | |||||| ||| || ||| ||||| || | || Sbjct 673256 CAAA---ATGGCGCGGCAGTTGGTACTTTTACCCTAGCTGTTGACCGTCGTTTCACCAAT 673200 Query 27485 GCTAATGGTGAGCGTGAAGCAGATTTTATCAATTGCGTTATCTGGCGCCAGCAAGCTGAA 27544 | |||||||| || ||||| || || |||| || ||||| ||||| | ||||||| Sbjct 673199 TCGAATGGTGATCGGGAAGCTGACTTCGTCAACTGTGTTATTTGGCGAAAATCAGCTGAA 673140 Query 27545 AATTTGGCTAATTGGGCTAAAAAAGGCGCATTGATTGGAATTACTGGACGTATTCAGACC 27604 || || || || | | | || || || | ||||||| || || ||||||||| Sbjct 673139 AACTTTGCCAACTTCGTGCATAAGGGTTCACTTGTTGGAATCGAAGGTCGGATTCAGACC 673080 Query 27605 CGTAGCTATGAAAACCAACAAGGGCAACGAGTGTATGTGACAGAGGTAGTCGCTGAGAAC 27664 || | || || ||| | || || |||||||| ||||| || || ||||| | ||||||| Sbjct 673079 CGAAATTACGAGAACAAGCAGGGCCAACGAGTTTATGTTACCGAAGTAGTTGTTGAGAAC 673020 Query 27665 TT 27666 || Sbjct 673019 TT 673018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105807940097014