Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq4797 187 2e-42 seq844 185 6e-42 >seq4797 Length=43377 Score = 187 bits (206), Expect = 2e-42 Identities = 461/687 (67%), Gaps = 43/687 (6%) Strand=Plus/Minus Query 58729 CAGGTTGAGGCCGCTGGCCCGGTAGCGCTGCTGCTCGAAGCTCCGATCCCTGATTTCCCC 58788 |||||| | |||| | ||||||| |||| ||| | ||| || | |||||| || Sbjct 12179 CAGGTTCATGCCGGCGATCCGGTAGTGCTGTCCTTCGGCGGACCGGTCGCGGATTTCGCC 12120 Query 58789 AAGGCGGTTGAAGAACACCGCCCTGGCCAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCC 58848 |||| | |||| | |||| ||||| | |||| ||||| ||||| || || Sbjct 12119 CCGGCGATGGAAGCTGATGGCCCGCTTCAGCGCATGATGCGCTTCACCCTTGTTGAGACC 12060 Query 58849 GGCATGCACGCGGCGGCGCAGTTCAACACTTTGCAGCCAGTCCAGGATGAACAGCGTGCG 58908 | || ||||||| |||| || || | | |||||| | ||||||| |||||| Sbjct 12059 GATCTGGGCGCGGCGTTGCAGATCGGCATCCAGAATCCAGTCGATCATGAACAACGTGCG 12000 Query 58909 CTCGATCCGGCCCAGCTCGCGCAGGGCCACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCC 58968 ||||| ||||| | ||||||||| ||| ||| ||| ||||||| | ||| ||| | | Sbjct 11999 CTCGACGCGGCCGACCTCGCGCAGAGCCGTGGCAAGTTCGTTCTGCCTCGGATAGGAGGC 11940 Query 58969 GAGCTTGCGCAGCATCAGCGAGGCGGTGACGGTGCCCTGCTTGATCGAGCTGGCCAGGCG 59028 |||||||||||| ||| | || | |||| | || | ||| | ||| | ||| Sbjct 11939 GAGCTTGCGCAGAATCTGGCTGGGCGCGACGCTCCCAGCCGCGATGGTCGCGGCGATGCG 11880 Query 59029 CAGGATGTCGTCCCAG-TGGGCACG--CA---CGTGCTTGATGTTCAGGGTGCCGCCGAT 59082 |||||||||| |||| || || || || | || ||||| ||| || ||||| Sbjct 11879 CAGGATGTCGGGCCAGTTGCGCTCGATCATGGCCTGATTGATCTTC------CCACCGAT 11826 Query 59083 CAGCGGGCGCAA---CGTCGG-GTA------GGCTTGCACGCCCTGCGGCACGTACAGCT 59132 || | ||||| || ||| ||| || ||| |||| | | | ||| Sbjct 11825 CAAGGCCCGCAAGTGCGCCGGCGTAGCCGATGGATTGAACGCATAGAG-------CCGCT 11773 Query 59133 TGGTTTCGCCGAGGTCGCGGATGCGCGGCGCGAAGCGGAAGCCTAGCA-GGTGCATCAGG 59191 ||| || | ||||| ||||| ||||| ||||||||| |||| || | ||||||| | Sbjct 11772 TGG--ACGGC-AGGTCACGGATACGCGGGGCGAAGCGGTAGCCGAGAATGGTGCAT-GCG 11717 Query 59192 GCAAAGACGTGATCGGTGAAGCCGGCCGTGTCGGTGTAGTGCTCCTCGATCCGCAGGTCG 59251 |||||||||||||||||||||||| | ||||||| | | ||||| ||| | || | Sbjct 11716 GCAAAGACGTGATCGGTGAAGCCGCCTGTGTCGGCGAACTGCTCGCGGATATGACGGCCA 11657 Query 59252 GACTCGTGGTACAGCAGGCCGTCGAGCACATAGGTGGAATCGC-GGACGCCGACATTCAC 59310 | |||| |||| ||||||||| | ||||| | |||| | || || | | Sbjct 11656 GCATCGTTCATGAGCAAGCCGTCGAGGATATAGGGCGCTTCGCTTGCCGTCG-CGGGGAT 11598 Query 59311 CACGCGGGTGCTGAACGGCGCGTACTGGTCGGAGATATGGGTATAGAACAGCCGT---CC 59367 ||| |||| || |||||| || |||||||||| |||| | || |||| | || Sbjct 11597 CACCTGGGTCGCGAGCGGCGCATATTGGTCGGAGACATGGCTGTA----AGCCTTCAGCC 11542 Query 59368 CGGCTCGCTACCGTACTTCGGGTTGAC 59394 |||| | ||||| |||| |||||| Sbjct 11541 CGGCATATTGCCGTATTTCGCGTTGAC 11515 Score = 185 bits (204), Expect = 6e-42 Identities = 461/688 (67%), Gaps = 44/688 (6%) Strand=Plus/Minus Query 58729 CAGGTTGAGGCCGCTGGCCCGGTAGCGCTGCTGCTCGAAGCTCCGATCCCTGATTTCCCC 58788 |||||| | |||| | ||||||| |||| ||| | ||| || | |||||| || Sbjct 30088 CAGGTTCATGCCGGCGATCCGGTAGTGCTGTCCTTCGGCGGACCGGTCGCGGATTTCGCC 30029 Query 58789 AAGGCGGTTGAAGAACACCGCCCTGGCCAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCC 58848 |||| | |||| | |||| ||||| | |||| ||||| ||||| || || Sbjct 30028 CCGGCGATGGAAGCTGATGGCCCGCTTCAGCGCATGATGCGCTTCACCCTTGTTGAGACC 29969 Query 58849 GGCATGCACGCGGCGGCGCAGTTCAACACTTTGCAGCCAGTCCAGGATGAACAGCGTGCG 58908 | || ||||||| |||| || || | | |||||| | ||||||| |||||| Sbjct 29968 GATCTGGGCGCGGCGTTGCAGATCGGCATCCAGAATCCAGTCGATCATGAACAACGTGCG 29909 Query 58909 CTCGATCCGGCCCAGCTCGCGCAGGGCCACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCC 58968 ||||| ||||| | ||||||||| ||| ||| ||| ||||||| | ||| ||| | | Sbjct 29908 CTCGACGCGGCCGACCTCGCGCAGAGCCGTGGCAAGTTCGTTCTGCCTCGGATAGGAGGC 29849 Query 58969 GAGCTTGCGCAGCATCAGCGAGGCGGTGACGGTGCCCTGCTTGATCGAGCTGGCCAGGCG 59028 |||||||||||| ||| | || | |||| | || | ||| | ||| | ||| Sbjct 29848 GAGCTTGCGCAGAATCTGGCTGGGCGCGACGCTCCCAGCCGCGATGGTCGCGGCGATGCG 29789 Query 59029 CAGGATGTCGTCCCAG-TGGGCACG--CA---CGTGCTTGATGTTCAGGGTGCCGCCGAT 59082 |||||||||| |||| || || || || | || ||||| ||| || ||||| Sbjct 29788 CAGGATGTCGGGCCAGTTGCGCTCGATCATGGCCTGATTGATCTTC------CCACCGAT 29735 Query 59083 CAGCGGGCGCAA---CGTCGG-GTA------GGCTTGCACGCCCTGCGGCACGTACAGCT 59132 || | ||||| || ||| ||| || ||| |||| | | | ||| Sbjct 29734 CAAGGCCCGCAAGTGCGCCGGCGTAGCCGATGGATTGAACGCATAGAG-------CCGCT 29682 Query 59133 TGGTTTCGCCGAGGTCGCGGATGCGCGGCGCGAAGCGGAAGCCTAGCA-GGTGCATCAGG 59191 ||| || | ||||| ||||| ||||| ||||||||| |||| || | ||||||| | Sbjct 29681 TGG--ACGGC-AGGTCACGGATACGCGGGGCGAAGCGGTAGCCGAGAATGGTGCAT-GCG 29626 Query 59192 GCAAAGACGTGATCGGTGAAGCCGGCCGTGTCGGTGTAGTGCTCCTCGATCCGCAGGTCG 59251 |||||||||||||||||||||||| | ||||||| | | ||||| ||| | || | Sbjct 29625 GCAAAGACGTGATCGGTGAAGCCGCCTGTGTCGGCGAACTGCTCGCGGATATGACGGCCA 29566 Query 59252 GACTCGTGGTACAGCAGGCCGTCGAGCACATAGGTGGAATCGC-GGACGCCGACATTCAC 59310 | |||| |||| ||||||||| | ||||| | |||| | || || | | Sbjct 29565 GCATCGTTCATGAGCAAGCCGTCGAGGATATAGGGCGCTTCGCTTGCCGTCG-CGGGGAT 29507 Query 59311 CACGCGGGTGCTGAACGGCGCGTACTGGTCGGAGATATGGGTATAGAACAGCCGT----C 59366 ||| |||| || |||||| || |||||||||| |||| | || |||| | | Sbjct 29506 CACCTGGGTCGCGAGCGGCGCATATTGGTCGGAGACATGGCTGTA----AGCCTTCAAGC 29451 Query 59367 CCGGCTCGCTACCGTACTTCGGGTTGAC 59394 ||||| | ||||| |||| |||||| Sbjct 29450 CCGGCATATTGCCGTATTTCGCGTTGAC 29423 Score = 170 bits (188), Expect = 1e-37 Identities = 460/689 (67%), Gaps = 46/689 (7%) Strand=Plus/Minus Query 58729 CAGGTTGAGGCCGCTGGCCCGGTAGCGCTGCTGCTCGAAGCTCCGATCCCTGATTTCCCC 58788 |||||| | |||| | ||||||| |||| ||| | ||| || | |||||| || Sbjct 3022 CAGGTTCATGCCGGCGATCCGGTAGTGCTGTCCTTCGGCGGACCGGTCGCGGATTTCGCC 2963 Query 58789 AAGGCGGTTGAAGAACACCGCCCTGGCCAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCC 58848 |||| | |||| | |||| ||||| | |||| ||||| ||||| || || Sbjct 2962 CCGGCGATGGAAGCTGATGGCCCGCTTCAGCGCATGATGCGCTTCACCCTTGTTGAGACC 2903 Query 58849 GGCATGCACGCGGCGGCGCAGTTCAACACTTTGCAGCCAGTCCAGGATGAACAGCGTGCG 58908 | || ||||||| |||| || || | | |||||| | ||||||| |||||| Sbjct 2902 GATCTGGGCGCGGCGTTGCAGATCGGCATCCAGAATCCAGTCGATCATGAACAACGTGCG 2843 Query 58909 CTCGATCCGGCCCAGCTCGCGCAGGGCCACGGCCAGTCCGTTCTGGCG-CGGGTAGCTGC 58967 ||||| ||||| | ||||||||| ||| ||| ||| ||| ||| | ||| ||| | Sbjct 2842 CTCGACGCGGCCGACCTCGCGCAGAGCCGTGGCAAGTTCGT-CTGCCTACGGATAGGAGG 2784 Query 58968 CGAGCTTGCGCAGCATCAGCGAGGCGGTGACGGTGCCCTGCTTGATCGAGCTGGCCAGGC 59027 ||||||||||||| ||| | || | |||| | || | ||| | ||| | || Sbjct 2783 CGAGCTTGCGCAGAATCTGGCTGGGCGCGACGCTCCCAGCCGCGATGGTCGCGGCGATGC 2724 Query 59028 GCAGGATGTCGTCCCAGTGG-GCACG--CACG---TGCTTGATGTTCAGGGTGCCGCCGA 59081 ||||||||||| ||||| | || || || | || ||||| ||| || |||| Sbjct 2723 GCAGGATGTCGGGCCAGTTGCGCTCGATCATGGCCTGATTGATCTTC------CCACCGA 2670 Query 59082 TCAGCGGGCGCAA---CGTCGG-GTAGGC------TTGCACGCCCTGCGGCACGTACAGC 59131 ||| | ||||| || ||| |||| | ||| |||| | | | || Sbjct 2669 TCAAGGCCCGCAAGTGCGCCGGCGTAGCCGATGGATTGAACGCATAGAGCC-------GC 2617 Query 59132 TTGGTTTCGCCGAGGTCGCGGATGCGCGGCGCGAAGCGGAAGCCTAGCA-GGTGCATCAG 59190 |||| || | ||||| ||||| ||||| ||||||||| |||| || | ||||||| | Sbjct 2616 TTGGA--CGGC-AGGTCACGGATACGCGGGGCGAAGCGGTAGCCGAGAATGGTGCATGCG 2560 Query 59191 GGCAAAGACGTGATCGGTGAAGCCGGCCGTGTCGGTGTAGTGCTCCTCGATCCGCAGGTC 59250 | ||||||||||||||||||||||| | ||||||| | | ||||| ||| | || | Sbjct 2559 G-CAAAGACGTGATCGGTGAAGCCGCCTGTGTCGGCGAACTGCTCGCGGATATGACGGCC 2501 Query 59251 GGACTCGTGGTACAGCAGGCCGTCGAGCACATAGGTGGAATCGC-GGACGCCGACATTCA 59309 | |||| |||| ||||||||| | ||||| | |||| | || || | | Sbjct 2500 AGCATCGTTCATGAGCAAGCCGTCGAGGATATAGGGCGCTTCGCTTGCCGTCG-CGGGGA 2442 Query 59310 CCACGCGGGTGCTGAACGGCGCGTACTGGTCGGAGATATGGGTATAGAACAGCCGT---- 59365 ||| |||| || |||||| || |||||||||| |||| | || |||| | Sbjct 2441 TCACCTGGGTCGCGAGCGGCGCATATTGGTCGGAGACATGGCTGTA----AGCCTTCAAG 2386 Query 59366 CCCGGCTCGCTACCGTACTTCGGGTTGAC 59394 |||||| | ||||| |||| |||||| Sbjct 2385 CCCGGCATATTGCCGTATTTCGCGTTGAC 2357 >seq844 Length=3671 Score = 185 bits (204), Expect = 6e-42 Identities = 461/688 (67%), Gaps = 44/688 (6%) Strand=Plus/Minus Query 58729 CAGGTTGAGGCCGCTGGCCCGGTAGCGCTGCTGCTCGAAGCTCCGATCCCTGATTTCCCC 58788 |||||| | |||| | ||||||| |||| ||| | ||| || | |||||| || Sbjct 1625 CAGGTTCATGCCGGCGATCCGGTAGTGCTGTCCTTCGGCGGACCGGTCGCGGATTTCGCC 1566 Query 58789 AAGGCGGTTGAAGAACACCGCCCTGGCCAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCC 58848 |||| | |||| | |||| ||||| | |||| ||||| ||||| || || Sbjct 1565 CCGGCGATGGAAGCTGATGGCCCGCTTCAGCGCATGATGCGCTTCACCCTTGTTGAGACC 1506 Query 58849 GGCATGCACGCGGCGGCGCAGTTCAACACTTTGCAGCCAGTCCAGGATGAACAGCGTGCG 58908 | || ||||||| |||| || || | | |||||| | ||||||| |||||| Sbjct 1505 GATCTGGGCGCGGCGTTGCAGATCGGCATCCAGAATCCAGTCGATCATGAACAACGTGCG 1446 Query 58909 CTCGATCCGGCCCAGCTCGCGCAGGGCCACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCC 58968 ||||| ||||| | ||||||||| ||| ||| ||| ||||||| | ||| ||| | | Sbjct 1445 CTCGACGCGGCCGACCTCGCGCAGAGCCGTGGCAAGTTCGTTCTGCCTCGGATAGGAGGC 1386 Query 58969 GAGCTTGCGCAGCATCAGCGAGGCGGTGACGGTGCCCTGCTTGATCGAGCTGGCCAGGCG 59028 |||||||||||| ||| | || | |||| | || | ||| | ||| | ||| Sbjct 1385 GAGCTTGCGCAGAATCTGGCTGGGCGCGACGCTCCCAGCCGCGATGGTCGCGGCGATGCG 1326 Query 59029 CAGGATGTCGTCCCAG-TGGGCACG--CA---CGTGCTTGATGTTCAGGGTGCCGCCGAT 59082 |||||||||| |||| || || || || | || ||||| ||| || ||||| Sbjct 1325 CAGGATGTCGGGCCAGTTGCGCTCGATCATGGCCTGATTGATCTTC------CCACCGAT 1272 Query 59083 CAGCGGGCGCAA---CGTCGG-GTA------GGCTTGCACGCCCTGCGGCACGTACAGCT 59132 || | ||||| || ||| ||| || ||| |||| | | | ||| Sbjct 1271 CAAGGCCCGCAAGTGCGCCGGCGTAGCCGATGGATTGAACGCATAGAG-------CCGCT 1219 Query 59133 TGGTTTCGCCGAGGTCGCGGATGCGCGGCGCGAAGCGGAAGCCTAGCA-GGTGCATCAGG 59191 ||| || | ||||| ||||| ||||| ||||||||| |||| || | ||||||| | Sbjct 1218 TGG--ACGGC-AGGTCACGGATACGCGGGGCGAAGCGGTAGCCGAGAATGGTGCAT-GCG 1163 Query 59192 GCAAAGACGTGATCGGTGAAGCCGGCCGTGTCGGTGTAGTGCTCCTCGATCCGCAGGTCG 59251 |||||||||||||||||||||||| | ||||||| | | ||||| ||| | || | Sbjct 1162 GCAAAGACGTGATCGGTGAAGCCGCCTGTGTCGGCGAACTGCTCGCGGATATGACGGCCA 1103 Query 59252 GACTCGTGGTACAGCAGGCCGTCGAGCACATAGGTGGAATCGC-GGACGCCGACATTCAC 59310 | |||| |||| ||||||||| | ||||| | |||| | || || | | Sbjct 1102 GCATCGTTCATGAGCAAGCCGTCGAGGATATAGGGCGCTTCGCTTGCCGTCG-CGGGGAT 1044 Query 59311 CACGCGGGTGCTGAACGGCGCGTACTGGTCGGAGATATGGGTATAGAACAGCCGT----C 59366 ||| |||| || |||||| || |||||||||| |||| | || |||| | | Sbjct 1043 CACCTGGGTCGCGAGCGGCGCATATTGGTCGGAGACATGGCTGTA----AGCCTTCAAGC 988 Query 59367 CCGGCTCGCTACCGTACTTCGGGTTGAC 59394 ||||| | ||||| |||| |||||| Sbjct 987 CCGGCATATTGCCGTATTTCGCGTTGAC 960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330878467200406