Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4810 114 3e-20 seq4644 113 1e-19 seq4863 111 4e-19 seq4765 109 1e-18 >seq4810 Length=1195048 Score = 114 bits (126), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| | ||| ||||| || |||||||||||||||| || || | || || Sbjct 316971 AGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCC 316912 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||| ||||| || | ||||||||| | | || || ||||| | Sbjct 316911 TCCAGCTGCTTT--CCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGT 316854 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || ||||| |||| | | |||| || ||| || ||||| || || | Sbjct 316853 CCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGGCTCGACCTCAAGGGTGATGG 316794 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || | |||||| ||||||| |||||| Sbjct 316793 TCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 316760 Score = 105 bits (116), Expect = 2e-17 Identities = 153/213 (72%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| || |||||||||||||||| | || | || || || | Sbjct 316510 CAAG-TGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCCA 316452 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||| ||||| || | ||||||||| | | || || ||||| || || Sbjct 316451 GCTGCTTT--CCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 316394 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || ||||| |||| | |||| || ||| || ||||| || ||||| || Sbjct 316393 GATCTTGGCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGACCTCAAGGGTGATAGTCTT 316334 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||| || | |||||| ||||||| ||||| || Sbjct 316333 GCCGGTCAAAGTCTTGACGAAGATTTGCATGTT 316301 Score = 104 bits (114), Expect = 5e-17 Identities = 151/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| || ||||||||||| || | | ||| | ||||| || | Sbjct 316738 CAAG-TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCCTCCA 316680 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||| ||||| || | ||||||||| | | || || ||||| || || Sbjct 316679 GCTGCTTT--CCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 316622 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || ||||| |||| | | | || || ||| || ||||| || || || || Sbjct 316621 GATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTT 316562 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || | |||||| ||||||| |||||| Sbjct 316561 GCCGGTCAAAGTCTTGACGAAGATCTGCAT 316532 >seq4644 Length=1132839 Score = 113 bits (124), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || ||||| ||||| || ||||||||||| |||| | || | Sbjct 752754 GAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCG 752695 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || ||||||||||| | | |||||| || | | ||||| || Sbjct 752694 TCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGTATTCCCTC 752635 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| ||||| || ||| |||| | | |||| || ||| ||||| ||||| Sbjct 752634 CTTGTCTTGGATTTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGT 752575 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || |||||||| |||| ||||||| Sbjct 752574 GATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCATT 752535 Score = 105 bits (116), Expect = 2e-17 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || ||||||||||| || | | || | ||||| || | Sbjct 752058 CAAG-TGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCCA 752000 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || |||||||| || || | |||||| || | | |||||| ||||| || || | Sbjct 751999 GCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGA 751940 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT-TTTG 152075 | || || ||| |||| | | |||| || ||| ||||| ||||| || || ||| Sbjct 751939 TCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTTTC 751880 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || ||||||||||| |||| ||||||| Sbjct 751879 CGAGTAAGAGTCTTCACAAAGATCTGCATT 751850 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||| |||| | || | || ||||| | Sbjct 752286 CAAG-TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCTTCCA 752228 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| | | |||||| || | | |||||| ||||| || || | Sbjct 752227 GCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGA 752168 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | |||| || ||| || || | || || || || | Sbjct 752167 TCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTCTTTC 752108 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || |||||||||||||||| ||||||| Sbjct 752107 CGGTAAGAGTCTTCACGAAGATCTGCATT 752079 Score = 93.3 bits (102), Expect = 1e-13 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| || || ||||| || ||||||||||| |||| | || | || || Sbjct 752520 GAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTC 752461 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| | | |||||| || | | |||||| ||||| || Sbjct 752460 CTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTC 752401 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || || ||| |||| | | |||| || ||| || || | || || || Sbjct 752400 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGT 752341 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || |||||||| |||| ||||||| Sbjct 752340 CTTTCCGGTCAGGGTCTTCACAAAGATCTGCATT 752307 >seq4863 Length=1240122 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||| |||| | ||| | ||||| || | Sbjct 1064085 CAAG-TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCA 1064027 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||| ||||| || | |||||| || | | || || ||||| || || | Sbjct 1064026 GCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 1063967 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| |||| | | |||| ||| ||| || || || || || || |||| Sbjct 1063966 TCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTGC 1063907 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || |||||||||| |||||| Sbjct 1063906 CGGTGAGGGTTTTCACGAAGATCTGCAT 1063879 >seq4765 Length=3541379 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 |||||||| || || ||||| || || | | || | |||||||| || || || Sbjct 2921430 GTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 2921489 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| || | |||||| || | | |||||||| || || ||||| || |||| Sbjct 2921490 GCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 2921549 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | |||| || || || |||||||| || || ||||||||||| ||| Sbjct 2921550 ACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTC 2921609 Query 152088 TTCACGAAGACCTGCATTTT 152107 |||||||||| |||||| || Sbjct 2921610 TTCACGAAGATCTGCATCTT 2921629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153744798905611