Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_031915.1 Length=37395 Score E Sequences producing significant alignments: (Bits) Value seq4953 89.7 1e-13 >seq4953 Length=802672 Score = 89.7 bits (98), Expect = 1e-13 Identities = 198/293 (68%), Gaps = 8/293 (3%) Strand=Plus/Plus Query 28914 CAACAACTTCTGTGACATAAACACGTTGACCTTGCTGGTTATCATAGCTACGTGTTTGAA 28973 |||| ||||| || |||||||| ||||| || |||| ||| || || | || || |||| Sbjct 673028 CAACTACTTCGGTAACATAAACTCGTTGGCCCTGCTTGTTCTCGTAATTTCGGGTCTGAA 673087 Query 28974 TTACTCCTGTAACTCCGATAAGAGAGCCTTTTTTAGCCCAATTAACAAGATTTTCAGCTG 29033 | ||| | ||| | ||| || || || | | | || ||| |||||||||| Sbjct 673088 TCCGACCTTCGATTCCAACAAGTGAACCCTTATGCACGAAGTTGGCAAAGTTTTCAGCTG 673147 Query 29034 ACTGTCTCCAGATAACGCAATTGATAAAATCAGCCTCACGCTCTCCAGCCTCGTTCTTAA 29093 | | || ||| ||||| || |||| || ||||| || || || ||| | || | | Sbjct 673148 ATTTTCGCCAAATAACACAGTTGACGAAGTCAGCTTCCCGATCACCATTCGAATTGGTGA 673207 Query 29094 ATGGACGGTTTACAGCAAGAGTAAACGTAGCAA---CCGCAATATTAGATTGCGTGTATC 29150 | |||||| ||||| || ||||| ||| ||| |||| ||| ||| ||||||| Sbjct 673208 AACGACGGTCAACAGCTAGGGTAAAAGTACCAACTGCCGCGCCATT---TTGGGTGTATC 673264 Query 29151 TCAGTTCGGCATCTCTTGTAAGTCGCCCTACTAA-AACAACGTTATTTATCAT 29202 || || | |||| ||| | || || | ||| ||| || |||| ||||| Sbjct 673265 GCAAATCAACGTCTCGTGTTAAGCGTCC-AGTAAGAACTACTGTATTAATCAT 673316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119535102011194