Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_031935.1
Length=186386
Score E
Sequences producing significant alignments: (Bits) Value
seq4953 100 3e-16
seq4968 89.7 6e-13
seq4198 84.2 3e-11
>seq4953
Length=802672
Score = 100 bits (110), Expect = 3e-16
Identities = 67/75 (89%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 17859 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 17918
||||||||||||||| ||| ||||| |||||||||||||||||| |||| ||||||||
Sbjct 221906 GGGGAATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGAGGTCAACGGTTCGATC 221847
Query 17919 CCGCTATTCTCCATT 17933
||| |||||||||||
Sbjct 221846 CCGTTATTCTCCATT 221832
>seq4968
Length=441983
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 157427 TAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGC 157485
|||||||| ||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 267796 TAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGCTGGTTCGAATCCAGC 267854
>seq4198
Length=487851
Score = 84.2 bits (92), Expect = 3e-11
Identities = 71/87 (82%), Gaps = 4/87 (5%)
Strand=Plus/Minus
Query 17704 TGGGGTTGTAGCTCAGTCGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGAGGGTTCAA 17763
|| || ||||||||||| |||||||||||| ||||||||||| ||| |||| |||||| |
Sbjct 394279 TGCGGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGA 394220
Query 17764 GTCCCTTCAGTCCCGTATGCCACTTTA 17790
| ||| ||| || | |||||||||
Sbjct 394219 GCCCCGTCACTCGC----GCCACTTTA 394197
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596268879808560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |