Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq4953 100 3e-16 seq4968 89.7 6e-13 seq4198 84.2 3e-11 >seq4953 Length=802672 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 17859 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 17918 ||||||||||||||| ||| ||||| |||||||||||||||||| |||| |||||||| Sbjct 221906 GGGGAATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGAGGTCAACGGTTCGATC 221847 Query 17919 CCGCTATTCTCCATT 17933 ||| ||||||||||| Sbjct 221846 CCGTTATTCTCCATT 221832 >seq4968 Length=441983 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 157427 TAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGC 157485 |||||||| ||||||||||||| ||||||||||| || ||||||||||||||||||||| Sbjct 267796 TAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGCTGGTTCGAATCCAGC 267854 >seq4198 Length=487851 Score = 84.2 bits (92), Expect = 3e-11 Identities = 71/87 (82%), Gaps = 4/87 (5%) Strand=Plus/Minus Query 17704 TGGGGTTGTAGCTCAGTCGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGAGGGTTCAA 17763 || || ||||||||||| |||||||||||| ||||||||||| ||| |||| |||||| | Sbjct 394279 TGCGGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGA 394220 Query 17764 GTCCCTTCAGTCCCGTATGCCACTTTA 17790 | ||| ||| || | ||||||||| Sbjct 394219 GCCCCGTCACTCGC----GCCACTTTA 394197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596268879808560