Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4644 174 1e-38 seq4810 152 4e-32 seq4863 147 2e-30 seq4765 132 3e-26 >seq4644 Length=1132839 Score = 174 bits (192), Expect = 1e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||| | | ||||| ||| || ||| |||||| ||||||||||| || Sbjct 752310 CATTCCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 752251 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| |||| ||||||||||| || || |||||||||||||||||||||| Sbjct 752250 GGAGAGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGG 752191 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | || ||||| ||| ||||| ||||| | | |||||||||| | || Sbjct 752190 AGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTC 752131 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || |||||||| || || |||||||||||||| ||||| Sbjct 752130 CACCTCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAGATCTGCAT 752080 Score = 168 bits (186), Expect = 5e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||| | | ||||| || || || |||||| ||||||||||| || Sbjct 752538 CATTCCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTC 752479 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| |||| ||||||||||| ||||| |||||||||||||||||||||| Sbjct 752478 GGAGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGG 752419 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | || ||||| ||| ||||| ||||| | | |||||||||| | || Sbjct 752418 AGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTC 752359 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || |||||||| || ||||||||||| ||||| ||||| Sbjct 752358 CACCTCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 752308 Score = 165 bits (182), Expect = 6e-36 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||| | | ||||| ||| || ||| |||||| ||||||||||| || Sbjct 751853 CATTCCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 751794 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| |||| ||||||||||| ||||| |||||||||||||||||||||| Sbjct 751793 GGAGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGG 751734 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | || ||||| ||| ||||| ||||| | | |||||||| | | ||| Sbjct 751733 AGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGTTC 751674 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| || || |||||||| || | ||| ||||| ||||| ||||| Sbjct 751673 AACCTCCAAGGTGATGGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 751623 Score = 149 bits (164), Expect = 5e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || |||||| ||||||||||| |||| ||| ||| |||| || Sbjct 752745 CACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTC 752686 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| |||||||||||||||||||||| || | || ||||| || Sbjct 752685 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGTATTCCCTCCTTGTCTTG 752626 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || ||||| | | |||||||||| | ||||| |||| || || ||||| Sbjct 752625 GATTTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTT 752566 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || ||||||||||| ||||| ||||| Sbjct 752565 TCCAGTCAGGGTCTTCACAAAGATCTGCAT 752536 Score = 136 bits (150), Expect = 3e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||| | | ||||| ||| || || |||||| ||||||||||| || Sbjct 752082 CATTCCTCCGCGCAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTC 752023 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||||||||| ||||| || || | |||||||||||||| Sbjct 752022 TGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCTGG 751963 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | || ||||| ||| ||||| ||||| | | |||||||||| | || Sbjct 751962 AGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTC 751903 Query 44287 CACCTCCACCGTAATCGTCTTTCC-CGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||| || || |||||||| || || |||||||| ||||| ||||| Sbjct 751902 CACTTCCAGAGTGATGGTCTTTCCGAGTAAGAGTCTTCACAAAGATCTGCAT 751851 >seq4810 Length=1195048 Score = 152 bits (168), Expect = 4e-32 Identities = 177/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||| |||||| ||| |||||| |||||||||||||| Sbjct 316534 CATGCCTCCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATC 316475 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| |||| ||||||||||| ||||||||||||| ||||||||| |||| Sbjct 316474 GGACAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGG 316415 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| ||| | |||| | || ||||||| || | Sbjct 316414 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC-GTTCTCGATTGTGTCGGAGGGCT 316356 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | ||||| | || || ||||| || || | ||||| ||||||||||||||| || Sbjct 316355 CGACCTCAAGGGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCATGTTG 316300 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||| |||||| || |||||| ||||||||||| || Sbjct 316762 CATGCCTCCGCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTC 316703 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||||||||| ||||||||||||| ||||||||| |||| Sbjct 316702 AGAGAGAGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGG 316643 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| || | | |||| | ||||| |||| || | Sbjct 316642 GGGAATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCAATGGTATCGGAGGGCT 316584 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| | || || ||||| || || | ||||| |||||||| |||||| Sbjct 316583 CGACCTCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCATG 316531 Score = 134 bits (148), Expect = 1e-26 Identities = 150/195 (77%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 |||||| |||||||||||||||| | || || || |||| ||||||||||| ||||||| Sbjct 316951 CTCCTTCTGGATGTTGTAATCGGACAAGGTG-CGTCCGTCCTCCAGCTGCTTTCCGGCAA 316893 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 |||||| ||||||||| |||| || | || ||||| ||| ||||| || | | | Sbjct 316892 AGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACG 316834 Query 44265 TTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 ||| | |||||||||| || || ||||| | || || ||||| || || | ||||| Sbjct 316833 TTCTCGATGGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTG 316774 Query 44324 ACGAAGATTTGCATG 44338 |||||||| |||||| Sbjct 316773 ACGAAGATCTGCATG 316759 >seq4863 Length=1240122 Score = 147 bits (162), Expect = 2e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || |||||| ||||||||||| |||| || ||| | || || Sbjct 1064088 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTC 1064029 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||||||||||| |||||||||||||| || | || ||||| ||| Sbjct 1064028 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 1063969 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | |||||||| | | |||||||||| || || ||||| Sbjct 1063968 GATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTT 1063909 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || |||||||| ||||||||||| |||||| || Sbjct 1063908 GCCGGTGAGGGTTTTCACGAAGATCTGCATGGTG 1063875 >seq4765 Length=3541379 Score = 132 bits (146), Expect = 3e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| | || |||||| || ||||| || || | ||| ||| | || || Sbjct 2921417 CACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTC 2921476 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || |||||||||| |||||||||||||| ||| | ||||| || ||| Sbjct 2921477 CAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 2921536 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || | || | || ||||| | | ||| ||||| | || || ||||| Sbjct 2921537 AATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTT 2921596 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTG 44343 ||||||||||||||||||||||| ||||| |||| Sbjct 2921597 GCCCGTGAGGGTCTTCACGAAGATCTGCATCTTGTG 2921632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359967844463997