Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4863 150 4e-31 seq4810 147 5e-30 seq4765 145 2e-29 seq4644 141 2e-28 >seq4863 Length=1240122 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| ||||| || || || |||||||| |||||||| || ||| Sbjct 1063882 CAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCTTCGGAC 1063941 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| |||||||| || || || || || || ||||| Sbjct 1063942 ACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 1064001 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || ||||| | ||||| |||| || ||| || Sbjct 1064002 CGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATC 1064061 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 1064062 CAGAAGGAGTCGACCCTGCA-CTTG 1064085 >seq4810 Length=1195048 Score = 147 bits (162), Expect = 5e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || || || || |||||||| ||||| || ||| ||| Sbjct 316307 CAAATCTTCGTCAAGACTTTGACCGGCAAGACTATCACCCTTGAGGTCGAGCCCTCCGAC 316366 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| |||||||| || || || || || |||||||| Sbjct 316367 ACAATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAG 316426 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| ||||| || || ||| | || || ||||||| ||| || Sbjct 316427 CGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGATTACAACATC 316486 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 316487 CAGAAGGAGTCCACCCTTCA-CTTGGTT 316513 Score = 145 bits (160), Expect = 2e-29 Identities = 155/202 (77%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || || || |||||||| ||||| || ||| ||| Sbjct 316763 CAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCCGAC 316822 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| || || || || || |||||||| Sbjct 316823 ACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAG 316882 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || ||||| |||||||| ||||| || || ||| | || |||| ||||||| ||| | Sbjct 316883 CGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCAC-CTTGTCCGATTACAACAT 316941 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 ||| || || || || ||||| Sbjct 316942 CCAGAAGGAGTCCACTTTGCAT 316963 Score = 132 bits (146), Expect = 1e-25 Identities = 155/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || || || |||||||| ||||| || ||| || Sbjct 316535 CAGATCTTCGTCAAGACTTTGACCGGCAAGACCATCACCCTTGAGGTCGAGCCCTCCGAT 316594 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| |||||||| || || || || || |||||||| Sbjct 316595 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAG 316654 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| ||||| || ||||| | ||||| | || || ||| || Sbjct 316655 CGTCTGATCTTTGCCGGAAAGCAGCTGGAGGATGGTCGCACTCTCTCTGACTACAACATC 316714 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 316715 CAGAAGGAGTCGACCCTTCA-CTTGGTT 316741 >seq4765 Length=3541379 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || ||||| || ||||| ||| || ||| Sbjct 2921623 CAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCGGAC 2921564 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| ||||||||||||||||||||||| ||||| || ||||| Sbjct 2921563 ACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAG 2921504 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| |||||||| | || || | || |||||| | Sbjct 2921503 CGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATT 2921444 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 2921443 CAGAAGGAGTCTACCTTGCA-CTTG 2921420 >seq4644 Length=1132839 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || ||||| || |||||| | |||||||| || ||| Sbjct 752083 CAGATCTTCGTGAAGACTCTTACCGGAAAGACCATCACCTTGGAGGTGGAGCCATCCGAC 752142 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| || ||||||||||| || ||||| Sbjct 752143 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATCAGCAG 752202 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || ||||| ||||| ||| | || || |||| || ||| || Sbjct 752203 CGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGACGCACCCTCTCCGACTACAACATC 752262 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 752263 CAGAAGGAGTCCACCCTCCA-CTTG 752286 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || ||||| || |||||| | |||||||| || ||| Sbjct 752311 CAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACCTTGGAGGTGGAGCCATCCGAC 752370 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| || ||||||||||| || ||||| Sbjct 752371 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATCAGCAG 752430 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| || || ||| | || || |||| || ||| || Sbjct 752431 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCCGACTACAACATC 752490 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || ||||| |||||| Sbjct 752491 CAGAAGGAGTCAACCCTGCAT 752511 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| | || ||||| || |||||| | ||||| ||| || ||| Sbjct 751626 CAGATCTTTGTGAAAACCTTGACTGGAAAGACCATCACCTTGGAGGTTGAACCTTCGGAC 751685 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| || ||||||||||| || ||||| Sbjct 751686 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATCAGCAG 751745 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| || || ||| | || || |||| || ||| || Sbjct 751746 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCCGACTACAACATC 751805 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 751806 CAGAAGGAGTCCACCCTCCA-CTTG 751829 Score = 125 bits (138), Expect = 2e-23 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACA-GGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGA 177982 || || || ||||| ||||| || ||||| || ||||| || || ||||| || || Sbjct 751854 CAGATCTTTGTGAAGACTCTTACTCGGAAAGACCATCACTCTGGAAGTGGAGCCATCCGA 751913 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 |||||| ||||| || || ||||| |||||||| || ||||||||||| || ||||| Sbjct 751914 CACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATCAGCA 751973 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 || || || |||||||| || ||||| || ||||| | || || | || || ||| | Sbjct 751974 GCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCAGACTACAACAT 752033 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||| || || ||||| || || |||| Sbjct 752034 CCAGAAGGAGTCAACTCTCCA-CTTG 752058 Score = 114 bits (126), Expect = 3e-20 Identities = 149/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || ||||| || ||||| || || ||||| || ||| Sbjct 752539 CAGATCTTTGTGAAGACCCTGACTGGAAAGACCATCACTCTGGAAGTGGAGCCATCCGAC 752598 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || || || || ||||| || ||||| || || || ||||| Sbjct 752599 ACCATTGAGAATGTGAAGGCCAAAATCCAAGACAAGGAGGGAATACCCCCAGATCAGCAG 752658 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| || || ||| | || || |||| || ||| || Sbjct 752659 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCCGACTACAACATC 752718 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || ||||| || || |||| Sbjct 752719 CAGAAGGAGTCAACTCTCCA-CTTG 752742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203651911354354