Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq4644 152 5e-32
seq4863 129 5e-25
seq4765 125 7e-24
seq4969 86.0 6e-12
>seq4644
Length=1132839
Score = 152 bits (168), Expect = 5e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | ||||| |||||| || ||||||||| ||||| |||||||||
Sbjct 752534 CCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 752475
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || ||||||||||||||||| |||| ||||| || || | ||
Sbjct 752474 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 752415
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| | |||||||||| ||| || ||||| | | |||||| | |||||||
Sbjct 752414 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACC 752355
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || || || ||||| ||||| || || ||||||||
Sbjct 752354 TCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 752308
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | ||||| || || ||| ||||||||| ||||| |||||||||
Sbjct 752306 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 752247
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || ||||||||||| ||||| |||| ||||| || || | ||
Sbjct 752246 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGG 752187
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| | |||||||||| ||| || ||||| | | |||||| | |||||||
Sbjct 752186 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACC 752127
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || || || || || ||||| ||||| ||||||||
Sbjct 752126 TCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAGATCTGCAT 752080
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | ||||| || || || ||||||||| ||||| |||||||||
Sbjct 752762 CCTCCGCGGAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAG 752703
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || ||||||||||||||||| |||| ||||| || || | |||
Sbjct 752702 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGT 752643
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| | ||||||||| |||||| ||||| | | |||||| | ||||||
Sbjct 752642 ATTCCCTCCTTGTCTTGGATTTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACT 752583
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || || || ||||| ||||| || || ||||||||
Sbjct 752582 TCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 752536
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | ||||| || || ||| ||||||||| ||||| |||||||||
Sbjct 751849 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 751790
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || ||||||||||||||||| |||| ||||| || || | ||
Sbjct 751789 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 751730
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| | |||||||||| ||| || ||||| | | ||||| | || |||
Sbjct 751729 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGTTCAACC 751670
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || || || |||| || || || || ||||||||
Sbjct 751669 TCCAAGGTGATGGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 751623
Score = 120 bits (132), Expect = 3e-22
Identities = 164/228 (72%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | ||||| || || || ||||||||| ||||| ||||| |||
Sbjct 752078 CCTCCGCGCAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAG 752019
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || ||||||||||||||||| || || ||||| || || | ||
Sbjct 752018 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCTGGAGGG 751959
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| | |||||||||| ||| || ||||| | | |||||| | ||||||
Sbjct 751958 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACT 751899
Query 41816 TCCACCGTTATCGT-TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || ||| | || || ||||| || || ||||||||
Sbjct 751898 TCCAGAGTGATGGTCTTTCCGAGTAAGAGTCTTCACAAAGATCTGCAT 751851
>seq4863
Length=1240122
Score = 129 bits (142), Expect = 5e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || || || | ||||| ||||| || ||||||||| ||||| ||||||||
Sbjct 1064106 GCCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 1064047
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| | || || |||||||||||||| || ||||| ||||| || || | |||
Sbjct 1064046 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGG 1063987
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
|| || |||||||||| ||| || ||| | | | ||||| | ||||||
Sbjct 1063986 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCAC 1063927
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| || || || || || || || || || ||||| |||||||||
Sbjct 1063926 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATG 1063878
>seq4765
Length=3541379
Score = 125 bits (138), Expect = 7e-24
Identities = 169/233 (73%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
|||| || || || || | ||||| |||| || ||||||||||||||||||||| |
Sbjct 2921398 CGCCACCACGAAGGCGGAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAG 2921457
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753
|||||||||| | || || ||||||||||| || || ||||| ||||| || || | |
Sbjct 2921458 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAG 2921517
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812
||| | || |||||| ||| | || |||| || | | |||||| || ||
Sbjct 2921518 GAATTCCTTCTTTGTCC-TGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCG 2921576
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||||| | || || || || ||||| || ||||| ||||| |||||||| ||
Sbjct 2921577 ACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATCTT 2921629
>seq4969
Length=1161901
Score = 86.0 bits (94), Expect = 6e-12
Identities = 176/259 (68%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 85787 GGGCTGCTACATTCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGT 85846
||||| |||| || | || || || ||||| || ||| ||| || ||||||||
Sbjct 225946 GGGCTCCTACGGACGCGTGGCCCCACGCTCCGGTCTGGCCGTGAAGAACTTCATCGACGT 226005
Query 85847 GGGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCA 85906
||| ||||| || | |||| |||||||| || ||| | | |||| || ||||||||
Sbjct 226006 GGGAGCCGGCGTGGTGGACGAGGACTACCGTGGCAACCTGGGCGTCGTGCTGTTCAACCA 226065
Query 85907 CGGCGAAGAGGATCTGGTCGTGAGGCGAGGAGACAAGGTGGCCCAGTTCATCTGTGAAAA 85966
| || | ||| | | |||| ||| || ||| | |||||||||||||| ||
Sbjct 226066 CTCGGACGTGGAGTTCGAGGTGAAGCGCGGCGACCGCATCGCCCAGTTCATCTGCGAGCG 226125
Query 85967 AATCCACTATTCCGACATACAAGAAGT-GACAACTCTGGACACCACCCAACGAGGACAAG 86025
||| |||| | || | | || ||||| ||||| ||| | || ||| |||
Sbjct 226126 CATCTTCTATCCGGAGCTGGAGCTGGTCGACAA-GCTGGAGGACACTGAGCGCGGAGAAG 226184
Query 86026 GAGGATTCGGGTCCACCGG 86044
| |||||||| ||||||||
Sbjct 226185 GTGGATTCGGCTCCACCGG 226203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462274291189200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |