Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq449 174 2e-38 >seq449 Length=25286936 Score = 174 bits (192), Expect = 2e-38 Identities = 552/847 (65%), Gaps = 18/847 (2%) Strand=Plus/Plus Query 16661 ACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCT 16720 || || ||||| | ||||| || | || || || |||||||| || || || || Sbjct 11983475 ACCACTCCCATGCGCTGGTACTCCCCCACCTTCTTCTCAAAAAAGTTGGTCTTTCCATCC 11983534 Query 16721 AGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACC 16778 || ||||| |||||||||| | ||| || || | | || | || ||| | | Sbjct 11983535 AGCGATATCATCTCCATGAAGTTAAAGGGGTTTTTGGTGTTGTAGATCTTTCCAACG--C 11983592 Query 16779 CCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGT 16838 ||| || ||| || | |||||||| || || || || ||| |||| | ||||| | Sbjct 11983593 CCAACTCCACGAGCAAACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAAT 11983652 Query 16839 TCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCG 16898 |||| || || | | || || || || || || | || ||||| || | |||| Sbjct 11983653 TCATGCCAATCAAATTGACGGGCAGGGCATCGGTAAGGAACTCCTGCTCAATGGCCACCG 11983712 Query 16899 CTTCCTTAATAATA-CTAGCAA---CTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTA 16954 | || || || | | | |||| | | || || || | || |||| Sbjct 11983713 CGTCGCGGATGATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACC----AGGTGTTGG 11983768 Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 |||||||| || || ||||| || || |||||||| | |||||| ||||| || Sbjct 11983769 AACATCAGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAG 11983828 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 || ||||| || |||||| ||||| ||||| | ||| || || | ||||| || Sbjct 11983829 AAGGTCAATCCAGGCATCAGACCTCGCTTCTTAAGCCAGAAAATGGAAGCGAAGCTGCCG 11983888 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCT 17134 ||||| || ||||| |||| ||||| ||||| | ||||| || | | || | Sbjct 11983889 CTGAAGAAGATGCCCTCCACGGCGGCAAAGGCGATGATGCGTTCCCCGAAGTTGGCCGAT 11983948 Query 17135 TTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC--CATCGTT 17191 ||| | || ||||| | | |||| || || || |||| | || | ||||||| Sbjct 11983949 TTGG-AGGAGATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTCA--CAGCCGGCATCGTT 11984005 Query 17192 TCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251 || || || ||||| | | |||| | ||| | || || || || ||||| | Sbjct 11984006 TCGATAGCGTTAAACAGGTACTCTCGCTGGTGTGGATCACGGATGTAAGTGTCGATCAAA 11984065 Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311 | |||||||| || ||||| | |||||||||||| |||||||| ||||| ||||| || Sbjct 11984066 ACACTGTACATCTCCGAGTGCACGTTCTCCATGGCGATCTGAAAGCCGTAGAAGCAACGT 11984125 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371 || |||| || || || ||| ||| || ||| | || || ||||| ||||||||| Sbjct 11984126 GCCTCCGTGATCTGCACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCG 11984185 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGA 17431 ||| |||||||| || || | | ||| ||||||| ||||| | || Sbjct 11984186 TCGGAGGCGGCGAAGAAGGCAAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGG 11984245 Query 17432 ACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCC 17491 | |||| || | | || ||||| | |||||| || ||| ||||| ||| |||| Sbjct 11984246 CGGTGCCAATCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACAGTCCAGAAAGAAGCC 11984305 Query 17492 ACTGCCT 17498 | |||| Sbjct 11984306 TCAGCCT 11984312 Score = 91.5 bits (100), Expect = 2e-13 Identities = 177/256 (69%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 ||||| || | | ||| ||||| | | || |||||||| | |||| |||| || Sbjct 7827208 TTCATGTACCTAACCTTACCGAAGATAGCCCGCTCCTTCCAGCCCATGTCATGGACGCCG 7827149 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTT 119901 | | || ||| | ||| ||||| || |||||||| || ||||| | ||| ||| || Sbjct 7827148 CCAATGGACCACATGCAGCCCACATAGCCGTTGGGGTCGCGACCATCCAGACT-GTACTT 7827090 Query 119902 ATCGTTTAAGTAGATACAG-ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTA 119960 ||||| | ||| | || | |||||| || || ||| | |||||||||| | Sbjct 7827089 GTCGTTCAGCAGGATTGCGTACTCC-AACGCATGCTCCGGTGTCGCTGTCCATTCCAGAA 7827031 Query 119961 tttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAA 120020 | ||||| ||||||||||| || || | || ||||| || || || || |||| || | Sbjct 7827030 TCTTTTTGGCCCAGTACATGCGCAAAAAGCCGTGCATCTTTCCCTCGCGTACCAGCTGCA 7826971 Query 120021 GTTGTGCGGCGTTCCA 120036 |||| || | |||||| Sbjct 7826970 GTTGCGCCGAGTTCCA 7826955 Score = 91.5 bits (100), Expect = 2e-13 Identities = 177/256 (69%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 ||||| || | | ||| ||||| | | || |||||||| | |||| |||| || Sbjct 7830318 TTCATGTACCTAACCTTACCGAAGATAGCCCGCTCCTTCCAGCCCATGTCATGGACGCCG 7830259 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTT 119901 | | || ||| | ||| ||||| || |||||||| || ||||| | ||| ||| || Sbjct 7830258 CCAATGGACCACATGCAGCCCACATAGCCGTTGGGGTCGCGACCATCCAGACT-GTACTT 7830200 Query 119902 ATCGTTTAAGTAGATACAG-ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTA 119960 ||||| | ||| | || | |||||| || || ||| | |||||||||| | Sbjct 7830199 GTCGTTCAGCAGGATTGCGTACTCC-AACGCATGCTCCGGTGTCGCTGTCCATTCCAGAA 7830141 Query 119961 tttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAA 120020 | ||||| ||||||||||| || || | || ||||| || || || || |||| || | Sbjct 7830140 TCTTTTTGGCCCAGTACATGCGCAAAAAGCCGTGCATCTTTCCCTCGCGTACCAGCTGCA 7830081 Query 120021 GTTGTGCGGCGTTCCA 120036 |||| || | |||||| Sbjct 7830080 GTTGCGCCGAGTTCCA 7830065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517533502371600