Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq449 96.9 4e-15 >seq449 Length=25286936 Score = 96.9 bits (106), Expect = 4e-15 Identities = 180/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 |||||||| | | ||| || || | | ||||||||||| | |||| |||| || Sbjct 7827208 TTCATGTACCTAACCTTACCGAAGATAGCCCGCTCCTTCCAGCCCATGTCATGGACGCCG 7827149 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTT 119054 | | | ||| | || ||||| || |||||||| || || || | ||| |||||| Sbjct 7827148 CCAATGGACCACATGCAGCCCACATAGCCGTTGGGGTCGCGACCATCCAGACT-GTACTT 7827090 Query 119055 ATCGTTTAAGTAGATACAG-ACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTA 119113 ||||| | ||| | || | |||||| ||||| ||| |||||||||| | Sbjct 7827089 GTCGTTCAGCAGGATTGCGTACTCC-AACGCATGCTCCGGTGTCGCTGTCCATTCCAGAA 7827031 Query 119114 tttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAA 119173 | ||||| ||||||||||| || ||| | |||||||| || |||||| | || ||| | Sbjct 7827030 TCTTTTTGGCCCAGTACATGCGCAAAAAGCCGTGCATCTTTCCCTCGCGTACCAGCTGCA 7826971 Query 119174 GTTGTGCGGTGTTCCATAG 119192 |||| || | |||||| || Sbjct 7826970 GTTGCGCCGAGTTCCACAG 7826952 Score = 96.9 bits (106), Expect = 4e-15 Identities = 180/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 |||||||| | | ||| || || | | ||||||||||| | |||| |||| || Sbjct 7830318 TTCATGTACCTAACCTTACCGAAGATAGCCCGCTCCTTCCAGCCCATGTCATGGACGCCG 7830259 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTT 119054 | | | ||| | || ||||| || |||||||| || || || | ||| |||||| Sbjct 7830258 CCAATGGACCACATGCAGCCCACATAGCCGTTGGGGTCGCGACCATCCAGACT-GTACTT 7830200 Query 119055 ATCGTTTAAGTAGATACAG-ACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTA 119113 ||||| | ||| | || | |||||| ||||| ||| |||||||||| | Sbjct 7830199 GTCGTTCAGCAGGATTGCGTACTCC-AACGCATGCTCCGGTGTCGCTGTCCATTCCAGAA 7830141 Query 119114 tttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAA 119173 | ||||| ||||||||||| || ||| | |||||||| || |||||| | || ||| | Sbjct 7830140 TCTTTTTGGCCCAGTACATGCGCAAAAAGCCGTGCATCTTTCCCTCGCGTACCAGCTGCA 7830081 Query 119174 GTTGTGCGGTGTTCCATAG 119192 |||| || | |||||| || Sbjct 7830080 GTTGCGCCGAGTTCCACAG 7830062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511402445688400