Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq448 109 4e-19 >seq448 Length=23513712 Score = 109 bits (120), Expect = 4e-19 Identities = 272/411 (66%), Gaps = 8/411 (2%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 ||||| || || || | ||||||||||| ||||| ||||| || ||| | || | Sbjct 2969168 GGGGATCTGGGGCCGGTGTACGGCTTCCAATGGAGGCATTTCGGGGCGCAGTACGGCACC 2969109 Query 18849 TGTCAATCAAACTATTTACAGCAAGGA-ATCGATCAGCTGCAAACTGTTATAGATACAAT 18907 || | |||| | |||||| ||||| ||||||| || || || || || Sbjct 2969108 TGCGACGACGACTACAG-CGGCAAGGGGATCGACCAGCTGCGCCAGGTGATCGACACCAT 2969050 Query 18908 TAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCC 18967 | | ||||| | ||| || || || || ||| ||||||||||| ||| ||||| Sbjct 2969049 CAGGAATAACCCCTCAGACCGTCGCATCATCATGTCGGCTTGGAATCCACTGGACATCCC 2968990 Query 18968 CTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAA------CGG 19021 |||| || || || || ||| || ||||||||||| | | ||| Sbjct 2968989 AAAGATGGCCCTGCCGCCGTGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGAAGCGCGG 2968930 Query 19022 TGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAA 19081 ||| | || ||||| ||||||||||| | || |||||||| || ||||| ||||| Sbjct 2968929 TGAGCTTTCGTGCCAGCTATACCAGAGAAGCGCAGACATGGGCCTGGGCGTACCCTTCAA 2968870 Query 19082 CATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGG 19141 ||| || ||||| || || ||| |||| | || ||||| || || || || | || Sbjct 2968869 CATCGCCTCCTATGCCCTGCTCACCCACATGATTGCCCATGTGACGGGTCTGAAGCCGGG 2968810 Query 19142 AGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGA 19192 || || |||| || ||||| || |||| | ||| |||| || |||| Sbjct 2968809 CGACTTTGTTCACACCATGGGCGACACACACGTCTACCTGAACCACGTAGA 2968759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399494895054150