Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq448 289 3e-73 >seq448 Length=23513712 Score = 289 bits (320), Expect = 3e-73 Identities = 1198/1876 (64%), Gaps = 38/1876 (2%) Strand=Plus/Plus Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857 ||||| || ||||| ||||||| | | || || || || || |||||||||||||| Sbjct 10325243 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 10325302 Query 52858 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGG 52917 ||||| ||||| |||| |||||||| || || || || ||| | || Sbjct 10325303 GGTTTTGAGACCAGCTTTCCAGGAATAAAAATGTATGGAGGTCAGCTTTCCATAGTTTGG 10325362 Query 52918 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 52977 || || | ||| || || | || ||||| ||||| ||||| || || | || || || Sbjct 10325363 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 10325422 Query 52978 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 53036 |||||| || | | ||| | |||||||| | || || || | |||| | Sbjct 10325423 CATTTTAATCGTGGACTTGACCGAGATTTCCCACACCGTCTTGTACAGATCGCGCAC--- 10325479 Query 53037 CTTCTGGAAGGTTTGTATTCTGAATA-----GATCCACCATCTACC----ATAATCCTAT 53087 |||| || ||| || ||| ||| |||| | | ||| | || ||| | Sbjct 10325480 CTTCGGG--GGTATGG--TCTCAATGTTTTGGATCGATCCTCTGCTGGATATGATCTGGT 10325535 Query 53088 TCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAA 53147 |||| || || || | ||| || | |||||||| | | | | ||| | || | Sbjct 10325536 TCTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGA 10325595 Query 53148 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 53207 | || || ||||| || |||| |||| ||| ||||| || || |||| || || || | Sbjct 10325596 CCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTTGTGGTGTAGGGCTCGA 10325655 Query 53208 CAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 53267 || |||||||| |||| || ||||| || ||||| || ||||| || || || | | Sbjct 10325656 AGGATTCATTATTGCCCATTATCTGAGCTGTAGATGCCGTGGGCATGGGAGCAACAAGCA 10325715 Query 53268 AACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGAT 53327 | || | | ||||| | || || || || | | ||| | ||| || | Sbjct 10325716 GAGAGTTCCGGACACCGTGCATCCTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 10325775 Query 53328 CCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCT 53386 || || || ||| | ||| || || || | | | ||| Sbjct 10325776 TCGTTGGCACCTTGTCCCACATGTCGTATTGCAAAATTCCCTTGCTTACCGGGCTGCCCT 10325835 Query 53387 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 53446 | || || |||||||| ||||| ||| || ||||| || || || || || || || Sbjct 10325836 -CGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 10325894 Query 53447 TAATAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATCAAATGG 53505 || ||||| |||||||| |||| || ||| | || | ||||| ||| || | || Sbjct 10325895 TAGTAAATCGTTTCGAATATCTGCTGATTCAAGAGACCG-GCTTCTTCGCTTTCGTACGG 10325953 Query 53506 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 53565 || | |||||| || || || || ||||| |||| |||||| || | || | || Sbjct 10325954 GAAACGCATGAGAATCAAAGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTG 10326013 Query 53566 TCTCTTATTAGAGATTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 53623 ||| ||| || |||| || ||||| | ||||||||| || ||||| || || || Sbjct 10326014 CCTCAAATTGGA--TTTCCTTGCCTCTGGCAGAGGATAATAGTTGATATCAATTATCTTG 10326071 Query 53624 TTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTG 53679 || || ||| || || || ||| || ||||| || || |||||| | || Sbjct 10326072 TTTAGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTGAAATCATACGTCTTC 10326131 Query 53680 TCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATT 53739 ||| | ||||||||||||| | ||||| || |||| || || || |||| ||||| Sbjct 10326132 TCCGGCG-TTACAAACATGTTGAGGGCAATGGAGGCCAAGTTGCAGACTGCTATCTCATC 10326190 Query 53740 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 53799 | | | |||| || || || || || | || || |||||||| || || | ||| Sbjct 10326191 CGGTGCGGAGTATTCTACGATTTCCGTACACAAGTTGCTGCACTTGATTGTGCCCACATT 10326250 Query 53800 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTC 53859 || || || ||||| |||| || || ||||| | || ||| | || | || || || Sbjct 10326251 CTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAACAGCATGTACGGATTTCCGGTCTC 10326310 Query 53860 AATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCT 53919 | || | || || || || ||| | | ||||||| | | ||| | Sbjct 10326311 CACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTG--GCC 10326368 Query 53920 CTTTTCTCTT--TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCC 53977 | ||||| |||||| |||| ||| || || || ||||| || | || Sbjct 10326369 CGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACGTCGTGG 10326428 Query 53978 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 54037 | |||||||| | | || ||||| | |||||| || |||| ||| ||| |||||| Sbjct 10326429 AGACCAGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTC 10326488 Query 54038 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 54097 || |||||||| || ||||| || || ||| ||||| | | | || || || || Sbjct 10326489 ATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTG 10326548 Query 54098 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 54157 ||||| ||||| || || || |||||| | | | ||| || ||||| ||||||| ||| Sbjct 10326549 CCTGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGGTAA 10326608 Query 54158 ATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 54217 |||| | | || || || ||| ||||||||||| | || | || ||||| Sbjct 10326609 ATGGCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTG 10326668 Query 54218 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 54277 |||| |||| |||||||| | ||||| || | ||||| || ||| | || | | Sbjct 10326669 AAAACCCTCAGCATTGGAACCAACCCATTCGAAGTTCCATTTGTGCCGCAAATCGATGTG 10326728 Query 54278 CCACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTA 54335 || | |||||||| | | || | | || || || || || || || ||||| | Sbjct 10326729 CCCTTTGCACGAATGCAGT-GTACGTTA-AGTCCAATGCCACCGGCGGACTTGGAGATCA 10326786 Query 54336 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 54395 ||||| | | | | | | |||||||| || || | ||||| | || | Sbjct 10326787 TGGCGCACTGCTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAA 10326846 Query 54396 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 | ||||| |||| || | || | || | || ||| | || || || || | Sbjct 10326847 GGAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCAT 10326906 Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515 |||| || | || || || ||||| || || || | || | || |||||| | Sbjct 10326907 GCGTGAAGTAGCGCTCCGATAGAAGATTATAAGTTTCCACGGCCGCATCGATATCCTCTC 10326966 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575 ||| ||||| | || || ||||| | ||| ||||| |||| || ||||||| || Sbjct 10326967 CATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGT 10327026 Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635 || |||| |||| ||||| |||| || || || ||||||||||| || ||||| Sbjct 10327027 TTCTTTTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATAGCCAAAGT 10327086 Query 54636 CTCGTTCGTAAATAAT 54651 | || || || || || Sbjct 10327087 CACGATCATAGATTAT 10327102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593707721757600