Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq448 237 2e-57 >seq448 Length=23513712 Score = 237 bits (262), Expect = 2e-57 Identities = 547/815 (67%), Gaps = 28/815 (3%) Strand=Plus/Plus Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596 || || ||||| ||||| |||| | || || | |||| | | | | ||||||| Sbjct 2968606 TACACGGCCATGTCCATTTGGATTTTTGGATGTGGATTGTAGTCGACTATCTGAAAGTCC 2968665 Query 145597 TCCGCCCTGAAGTCATCTATGTCCTCCACCCGCC---TCAGGATCCTGAGCCTGGGAAAG 145653 || | |||||| || ||||||| |||| | | | | |||| ||| |||||||| Sbjct 2968666 TCGAAGCGGAAGTCCTCGATGTCCTGCACCTGACGTTTAATGATC---AGCTTGGGAAAG 2968722 Query 145654 GGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGC 145713 || || || | | ||| || |||||| ||||| |||||||| ||||||||||| Sbjct 2968723 GGTCGCGGTGTGCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGTTCAGGTAGACGTGT 2968782 Query 145714 GCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATG 145773 | ||| |||| | ||| | ||||| || |||| || ||||| | ||||| | |||| Sbjct 2968783 GTGTCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCACATGGGCAATCATG 2968842 Query 145774 TAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAG 145833 | ||| ||||||| ||| ||| ||||||||||| || ||||| |||||||| | Sbjct 2968843 TGGGTGAGCAGGGCATAGGAGGCGATGTTGAAGGGTACGCCCAGGCCCATGTCTGCGCTT 2968902 Query 145834 CGCTGGTACAGCTGGCAGGAGAGCTCCCCGC------CCGCCACGTAGAACTGGCACAGG 145887 | |||||| |||||||| || ||||| |||| | | ||||| ||||| || | Sbjct 2968903 CTCTGGTATAGCTGGCACGAAAGCTCACCGCGCTTCTCGGAGACGTAAAACTGCGCCAAG 2968962 Query 145888 AGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACG 145947 |||||| |||||||||||||| || | |||| || ||||| || | | || | Sbjct 2968963 CAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGTGGATTCCAAGCCGACATGATG 2969022 Query 145948 AGCCTCCTGCTCT-CGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCAC 146006 | | | | ||| |||||| || |||| | |||| | | |||||||| | Sbjct 2969023 ATGCGAC-GGTCTGAGGGGTTATTCCTGATGGTGTCGATCACCTGGCGCAGCTGGTCGAT 2969081 Query 146007 GCCCTGCCCCCGGTAATCTGTC-TTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACT 146065 |||| || | ||| || ||| | | || ||||| |||||||| |||||||| | Sbjct 2969082 CCCCTTGCCGCTGTAGTC-GTCGTCGCAGGTGCCGTACTGCGCCCCGAAATGCCTCCATT 2969140 Query 146066 GGAACCCGTAGACGGGCCCCAGGTCCCC--GGGCT--CCCTGTG--CCCCAGCCCGGCCC 146119 |||| ||||| || |||||||| ||||| |||| ||| ||| ||||| | | || Sbjct 2969141 GGAAGCCGTACACCGGCCCCAGATCCCCAACGGCTCGCCCCGTGAACCCCATCTTGTCC- 2969199 Query 146120 GGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCT 146179 || || || | ||| | ||| | |||||||| | || | |||| ||| Sbjct 2969200 -----AGAAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCGCCTGCAGCA 2969254 Query 146180 CATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGA 146239 |||| |||||| ||| | |||||| |||||||| ||| ||| | | ||| Sbjct 2969255 GCTTGGCGTCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCCACCGCGCGGAAGA 2969314 Query 146240 AGACCCTCTTGGTGGTCAGCAGGGGGAACTGGCCCCGCAGGGAGTACTTGGCCTGGTCCC 146299 |||| | ||| |||||||||| || || | ||||| | | | ||| | Sbjct 2969315 AGACGCGCTTCGTGGTCAGCAAAGGAAAGGAGTTCCGCATGTCGAAGCGCATCTGACTGC 2969374 Query 146300 CGAAGACGGACAGGGTGCCCACGCCCGTCCTGTCC 146334 |||| |||||||| |||||||| |||| | |||| Sbjct 2969375 CGAACACGGACAGAGTGCCCACCTCCGTGCGGTCC 2969409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590063006954800