Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq448 125 6e-24 seq450 111 1e-19 seq1 86.0 5e-12 >seq448 Length=23513712 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| ||||||||||| |||||||| ||||| | | Sbjct 4228251 CCACCACGCAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 4228192 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||| ||||| || | || || | |||||| || ||| Sbjct 4228191 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 4228132 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| ||||| || |||||| || || | ||| || ||| |||||| Sbjct 4228131 ATGCCCTCCTTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACC 4228072 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| | ||||| || || || ||||| Sbjct 4228071 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 4228025 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| ||||||||||||||||| |||||||||||||| | Sbjct 10409957 CCACCACGCAGGCGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 10409898 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| || | || || | |||||| || || Sbjct 10409897 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 10409838 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| ||||| ||| || | ||| |||||| || || Sbjct 10409837 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACC 10409778 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAAT 21182 || | || ||||||||||| || | || || || || || ||||| ||| || Sbjct 10409777 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTAT 10409724 >seq450 Length=28110227 Score = 111 bits (122), Expect = 1e-19 Identities = 229/336 (68%), Gaps = 11/336 (3%) Strand=Plus/Plus Query 23617 CCAATGATGCCGCAGCCCAGCCGGCCGCCAGAATTGCCCGTGGTCTTGCTGAGCGGGTGC 23676 ||||| | |||||| || | ||| | |||| |||||||| | |||||| ||| ||| Sbjct 11112469 CCAATAACGCCGCACCCGATGCGGGCACCAGCGTTGCCCGTTGACTTGCTCAGCTCGTGT 11112528 Query 23677 TCGCCGAGGCCCAGGTCATCGCGGTCCGTGTGCACGACCAGGCTGCGGCCCAATATACTC 23736 | || |||| || |||||| || | ||||||||| | | |||| || | || || Sbjct 11112529 CCACCCTGGCCAAGATCATCGGCATCGGCGTGCACGACAACGGTGCGTCCGATGATGCTG 11112588 Query 23737 AACGGC-CCAAACAGGGTTATCACGTTGTCGCTCATGTGTATGGCCGTGAGTGCGGTGCA 23795 |||| || || || || ||| | |||| | |||| || || || | || ||| Sbjct 11112589 T-CGGCGCCGAAGAGCGTAATCTTGGAGTCGGTGATGT---TGACCTTG---GTGGGGCA 11112641 Query 23796 GCCCGCAGAGCGCAC---GTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGC 23852 | | | | | | | ||||||||| ||||| | ||| || | | || || |||| || Sbjct 11112642 GTCGCCGGTGGCCTCAATGTTGCCCAGATCGCCCAGGTGACGATTCTCGTCGACGGGAGC 11112701 Query 23853 GCCGTGTCTCTGGCGGGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGT 23912 ||| || || || || || |||||| || | ||| ||||||| ||| || | Sbjct 11112702 GCCATGCTCCTTGCCATACGGATTGAAGTGCGGTCCGGACGACATGCAGCCATTGGTGTT 11112761 Query 23913 GTCGCCGAATTCGTGCACGTGAAAACCGTGCAGCCC 23948 ||| ||||| ||||||||||| || |||||||| || Sbjct 11112762 GTCACCGAACTCGTGCACGTGGAATCCGTGCAGACC 11112797 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| |||||||| || || | |||||| | |||| ||||| || ||||| Sbjct 3901563 GTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCG 3901622 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | |||||| || ||| | ||||||||||| |||||| || Sbjct 3901623 GCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTA 3901682 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || |||||| || | ||| |||||||| ||||| || || Sbjct 3901683 ACATTCTCAATGGTGTCCGAGGGCTCTACCTCGAGGGTGATGGTCTTTCCGGTCAAAGTC 3901742 Query 21159 TTGACAAATATTTGCATTTTGAAT 21182 || ||||| || ||||||||| || Sbjct 3901743 TTCACAAAGATCTGCATTTTGGAT 3901766 >seq1 Length=23542271 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | ||| |||||||| || ||||| ||||| | | Sbjct 6277610 CCACCACGCAGACGCAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 6277669 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||||||| || || || |||| | | |||||| || ||| Sbjct 6277670 AGAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGG 6277729 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | | | ||||| ||||| Sbjct 6277730 ATTCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCGGATGGCTCGACC 6277789 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || | || || || || || ||||| Sbjct 6277790 TCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 6277836 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||| | ||| || | ||||||||||||| || || Sbjct 6282303 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCCAGCTGCTTTCCG 6282362 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || |||| | | ||| || || ||| | || ||||||||| |||| | ||| Sbjct 6282363 GCGAAAATCAAACGCTGATGATCTGGGGGGATTCCATCCTTGTCGTGGATCCTGGCTTTG 6282422 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || || || ||||| ||||| |||| ||| ||||||||||| || | || Sbjct 6282423 ACGTGTTTGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTC 6282482 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 6282483 TTCACAAAGATCTGCAT 6282499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422249576448920