Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq450 91.5 1e-13 >seq450 Length=28110227 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| || || || || ||||||||||| |||| | Sbjct 3901533 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 3901592 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||| ||| ||||| || |||| || | || ||||| ||| Sbjct 3901593 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 3901652 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || || | ||| || | ||| ||||| |||||| Sbjct 3901653 ATTCCTTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAGGGCTCTACC 3901712 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | ||||||| | || |||||||| || || ||||| || |||||||| Sbjct 3901713 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAGATCTGCATTTT 3901762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379335354513150