Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq449 120 6e-22 >seq449 Length=25286936 Score = 120 bits (132), Expect = 6e-22 Identities = 300/451 (67%), Gaps = 5/451 (1%) Strand=Plus/Minus Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967 ||||| || | |||||||| || || || || |||||||| || || ||||| || Sbjct 11983933 GGAACGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGCTTC 11983874 Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 |||||||||| | ||||| | ||| | ||||||| | |||| |||||| ||| | || Sbjct 11983873 CATTTTCTGGCTTAAGAAGCGAGGTCTGATGCCTGGATTGACCTTCTCCAACGAGCTTAT 11983814 Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTG-CATGCATGCTGTTGAAAAAGGGTTTTG 102086 ||| | ||||| || | || ||||||||| | ||| || |||| || | | || Sbjct 11983813 CTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGC-TGATGTTCCAACA-CCTGGTG 11983756 Query 102087 TTGATACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAAC 102146 | |||| | | | || | || | || || || || || || ||||| | Sbjct 11983755 CAGCGACCCAAGC--GCGAGCGCATCATCGAGATCATCCGCGACGCGGTGGCCATTGAGC 11983698 Query 102147 AAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGA 102206 | || || || || | | ||||||| || || || | || ||||| ||| | ||||| Sbjct 11983697 AGGAGTTCCTTACCGATGCCCTGCCCGTCAATTTGATTGGCATGAATTGCGACCTGATGT 11983638 Query 102207 GCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACT 102266 |||||||||||| || || || || | | || || |||| | | |||| || Sbjct 11983637 CCCAGTACATTGAGTTCGTAGCGGACCGTTTGCTCGTGGAGTTGGGCGTTGGAAAGATCT 11983578 Query 102267 ATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACT 102326 | || | |||||||| |||||||| | || || || || |||||||||| Sbjct 11983577 ACAACACCAAAAACCCCTTTAACTTCATGGAGATGATATCGCTGGATGGAAAGACCAACT 11983518 Query 102327 TTTTTGAAAAGAGAGTCGCCGAGTATCAACG 102357 ||||||| |||| || | ||||| || || Sbjct 11983517 TTTTTGAGAAGAAGGTGGGGGAGTACCAGCG 11983487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989560290185850