Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq448 291 1e-73 seq449 174 2e-38 >seq448 Length=23513712 Score = 291 bits (322), Expect = 1e-73 Identities = 1206/1888 (64%), Gaps = 36/1888 (2%) Strand=Plus/Plus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 ||||| || ||||| ||||||| | | || || || || || |||||||||||||| Sbjct 10325243 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 10325302 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155 ||||| ||||| |||| |||||||| || || || || ||| | || Sbjct 10325303 GGTTTTGAGACCAGCTTTCCAGGAATAAAAATGTATGGAGGTCAGCTTTCCATAGTTTGG 10325362 Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215 || || | ||| || || | || ||||| ||||| ||||| || || | || || || Sbjct 10325363 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 10325422 Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62274 |||||| || | | ||| | |||||||| | || || || | |||| | Sbjct 10325423 CATTTTAATCGTGGACTTGACCGAGATTTCCCACACCGTCTTGTACAGATCGCGCAC--- 10325479 Query 62275 CTTCTGGAAGGTTTGTATTCTGAATG-----GATCCACCATCTACC----ATAATCCTAT 62325 |||| || ||| || ||| |||| |||| | | ||| | || ||| | Sbjct 10325480 CTTCGGG--GGTATGG--TCTCAATGTTTTGGATCGATCCTCTGCTGGATATGATCTGGT 10325535 Query 62326 TCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAA 62385 |||| || || || | ||| || | |||||||| | | | | ||| |||| | Sbjct 10325536 TCTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGA 10325595 Query 62386 CTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 62445 | || |||||||| || |||| |||| ||| ||||| || || |||| || || || | Sbjct 10325596 CCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTTGTGGTGTAGGGCTCGA 10325655 Query 62446 CCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 62505 || |||||||| |||| || ||||| || ||||| || ||||| || || || | | Sbjct 10325656 AGGATTCATTATTGCCCATTATCTGAGCTGTAGATGCCGTGGGCATGGGAGCAACAAGCA 10325715 Query 62506 AACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGAT 62565 | || | | ||||| | || || || || | | | ||| | ||| || | Sbjct 10325716 GAGAGTTCCGGACACCGTGCATCCTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 10325775 Query 62566 CCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCT 62624 || || || ||||| | ||| || || || | | | ||| Sbjct 10325776 TCGTTGGCACCTTGTCCCACATGTCGTATTGCAAAATTCCCTTGCTTACCGGGCTGCCCT 10325835 Query 62625 ACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCG 62684 | || || || ||||| ||||| ||| || |||| || || || || || || || Sbjct 10325836 -CGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 10325894 Query 62685 TAATAAATGGTTTCAAAGATCTTCTTATTTA-GATCTTGTGCTTCCGGGCTATCAAATGG 62743 || ||||| ||||| || |||| || ||| | || | ||||| ||| || | || Sbjct 10325895 TAGTAAATCGTTTCGAATATCTGCTGATTCAAGAGACCG-GCTTCTTCGCTTTCGTACGG 10325953 Query 62744 ATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62803 || | |||||| || || || || ||||| |||| |||||| || | || | || Sbjct 10325954 GAAACGCATGAGAATCAAAGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTG 10326013 Query 62804 TCTCTTATTAGAGATTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 62861 ||| ||| || |||| || ||||| | ||||||||| || ||||| || || || Sbjct 10326014 CCTCAAATTGGA--TTTCCTTGCCTCTGGCAGAGGATAATAGTTGATATCAATTATCTTG 10326071 Query 62862 TTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCA 62921 || |||||| || || || ||| || ||||| || || |||||| | || | Sbjct 10326072 TTTAGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTGAAATCATA-CGTCT- 10326129 Query 62922 TCTA-----TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCAT 62976 ||| ||||||||||||| | |||| || |||| || || || |||| ||||| Sbjct 10326130 TCTCCGGCGTTACAAACATGTTGAGGGCAATGGAGGCCAAGTTGCAGACTGCTATCTCAT 10326189 Query 62977 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAAT 63036 | | | |||| || || || || || | || || |||||||| || || | || Sbjct 10326190 CCGGTGCGGAGTATTCTACGATTTCCGTACACAAGTTGCTGCACTTGATTGTGCCCACAT 10326249 Query 63037 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 63096 | || || || ||||| |||| || || ||||| | || ||| | ||| | || || | Sbjct 10326250 TCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAACAGCATGTACGGATTTCCGGTCT 10326309 Query 63097 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC 63156 | | || | || || || || ||| | | | ||||||| | | ||| | Sbjct 10326310 CCACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCCC 10326369 Query 63157 TCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63216 | ||| |||||| |||| |||||| || || ||||| || | || | Sbjct 10326370 GACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACGTCGTGGA 10326429 Query 63217 ATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63276 | |||||| | | || ||||| | |||||| || |||| ||| ||| ||||||| Sbjct 10326430 GACCAGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCA 10326489 Query 63277 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336 | |||||||| || ||||| || || ||| ||||| | || | || || || || | Sbjct 10326490 TGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGC 10326549 Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396 |||| ||||| || || || |||||| | | | ||| || ||||| ||||||| ||| | Sbjct 10326550 CTGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGGTAAA 10326609 Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456 |||| | | || || || ||| ||||||||||| | || | || ||||| Sbjct 10326610 TGGCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGA 10326669 Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTC 63516 |||| |||| |||||||| | || || || | ||||| || ||| | || | | Sbjct 10326670 AAACCCTCAGCATTGGAACCAACCCATTCGAAGTTCCATTTGTGCCGCAAATCGATGTGC 10326729 Query 63517 CACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63574 | | |||||||| | | || | | || || || || || || || ||||| | Sbjct 10326730 CCTTTGCACGAATGCAGT-GTACGTTA-AGTCCAATGCCACCGGCGGACTTGGAGATCAT 10326787 Query 63575 TGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAG 63634 ||||| | | | | | | ||||| || ||| || | ||||| | || || Sbjct 10326788 GGCGCACTGCTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAG 10326847 Query 63635 AAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63694 ||||| |||| || | || | || | || ||| | || || || || || Sbjct 10326848 GAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATG 10326907 Query 63695 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63754 ||| || | || || || ||||| || || || | || | || |||||| | Sbjct 10326908 CGTGAAGTAGCGCTCCGATAGAAGATTATAAGTTTCCACGGCCGCATCGATATCCTCTCC 10326967 Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814 ||| ||||| | || || ||||| | ||| ||||| |||| || | || || ||| Sbjct 10326968 ATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTT 10327027 Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874 | |||| | || ||||| |||| || || || ||||||||||| || |||||| Sbjct 10327028 TCTTTTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATAGCCAAAGTC 10327087 Query 63875 TCGTTCGTAAATAATAACCGAATTGAGC 63902 || || || || || ||| || ||| Sbjct 10327088 ACGATCATAGATTATGGACGAGTTCAGC 10327115 >seq449 Length=25286936 Score = 174 bits (192), Expect = 2e-38 Identities = 541/835 (65%), Gaps = 3/835 (0%) Strand=Plus/Plus Query 33282 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33341 |||||||| ||||| || ||||| || || ||||| || || ||||| |||| Sbjct 11983478 ACTCCCATGCGCTGGTACTCCCCCACCTTCTTCTCAAAAAAGTTGGTCTTTCCATCCAGC 11983537 Query 33342 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAAT 33401 ||||| | |||||||| | ||| || || | ||||| || ||| || ||||| Sbjct 11983538 GATATCATCTCCATGAAGTTAAAGGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAAC 11983597 Query 33402 TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461 || | ||| | || || ||||| || || || ||||| || |||||||| Sbjct 11983598 TCCACGAGCAAACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATG 11983657 Query 33462 CCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTT 33521 || || | || || || || || | ||||| || || || ||||||| ||||| | Sbjct 11983658 CCAATCAAATTGACGGGCAGGGCATCGGTAAGGAACTCCTGCTCAATGGCCACCGCGTCG 11983717 Query 33522 GTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAA 33581 || || | | | || | ||| | || | | |||| ||||||| Sbjct 11983718 CGGATGATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACCAGGTGTTGGAACATCAGC 11983777 Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || |||||||||| |||||||| | | || | ||||| || || || | | Sbjct 11983778 ACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAAT 11983837 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| |||||||| || ||||||||||| ||| |||||| Sbjct 11983838 CCAGGCATCAGACCTCGCTTCTTAAGCCAGAAAATGGAAGCGAAGCTGCCGCTGAAGAAG 11983897 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTGTCATG--T 33758 || || || || || |||||||| || | | || || | || || | | | Sbjct 11983898 ATGCCCTCCACGGCGGCAAAGGCGATGATGCGTTCCCCGAAGTTGGCCGATTTGGAGGAG 11983957 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| | ||||| || ||||| || ||| ||||||||||| || || ||| Sbjct 11983958 ATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTA 11984017 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || || || | | | | ||| | ||||| |||||||||| ||| ||||| Sbjct 11984018 AACAGGTACTCTCGCTGGTGTGGATCACGGATGTAAGTGTCGATCAAAACACTGTACATC 11984077 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 ||||| || | ||| || ||||| |||||||| |||||||| || | ||||| || ||| Sbjct 11984078 TCCGAGTGCACGTTCTCCATGGCGATCTGAAAGCCGTAGAAGCAACGTGCCTCCGTGATC 11984137 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 ||||| || || || || || | | || || || || || || || ||| || Sbjct 11984138 TGCACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCGTCGGAGGCGGCG 11984197 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 34058 || || || | || || || |||| ||||| | || | ||||||| Sbjct 11984198 AAGAAGGCAAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAATCA 11984257 Query 34059 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | | || || || | |||||| || || || ||||| || || ||||| |||| Sbjct 11984258 GTAAGGTCCTTGGACAAATCCACCTCCTCGACAGTCCAGAAAGAAGCCTCAGCCT 11984312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629802878013600