Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq448 116 3e-21 >seq448 Length=23513712 Score = 116 bits (128), Expect = 3e-21 Identities = 511/804 (64%), Gaps = 5/804 (1%) Strand=Plus/Plus Query 36823 TTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATA 36882 || || | || ||| |||||||| ||||| || || | |||| |||||||| || Sbjct 10325280 TTGGTGCGCAGATAGTACATTCCGGTTTTGAGACCAGCTTTCCAGGAATAAAAATGTATG 10325339 Query 36883 CTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCT 36942 |||||| ||| | || | || | | | || ||| | | || ||||| |||||| Sbjct 10325340 GAGGTCAGCTTTCCATAGTTTGGCTCGGCCACATGTATGTTGAACGACTGACTCTGATCT 10325399 Query 36943 ATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACC 37002 || |||||||| | ||||| ||||||| | | | || || || ||||| ||| Sbjct 10325400 ATGAACGCACCACGATCGGCGGCCATTTTAATCGTGGACTTGACCGAGATTTCCCACACC 10325459 Query 37003 GTTTTATATATTTGTTTTATATTATCTGGTAAA-TCTAAATGTT--GAATAGAACCATTA 37059 || || || | | | || |||| ||| |||||| | || || || | Sbjct 10325460 GTCTTGTACAGATCGCGCACCTTCGGGGGTATGGTCTCAATGTTTTGGATCGATCCTCTG 10325519 Query 37060 TGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTA-TTAGTTCTCT 37118 | | || ||||| ||||| | | ||||| | | | || |||| || | Sbjct 10325520 CTGGATATGATCTGGTTCTTCATGTCGTCGTCCCACA-AGTCCAGCTCGGTTAGGTCGCG 10325578 Query 37119 CAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATT 37178 ||| | || | || || ||||| || || || || | |||| | || ||||| || Sbjct 10325579 CAACAAATGATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTT 10325638 Query 37179 GCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGG 37238 | || || || || | ||| |||||||| | | ||| |||| ||||||||| || || Sbjct 10325639 TGTGGTGTAGGGCTCGAAGGATTCATTATTGCCCATTATCTGAGCTGTAGATGCCGTGGG 10325698 Query 37239 CATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTC 37298 ||| || || | || || || | | || || | |||| || || | || Sbjct 10325699 CATGGGAGCAACAAGCAGAGAGTTCCGGACACCGTGCATCCTAATGGACTCCTTCAATTT 10325758 Query 37299 ATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTT 37358 | ||| ||||| | | ||||| ||| |||||| || ||||| | ||| || || Sbjct 10325759 CTGCCAGTCCCACAGGTTCGTTGGCACCTTGTCCCACATGTCGTATTGCAAAATTCCCTT 10325818 Query 37359 ACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACT 37418 || | || | | || || || || || || | | | || |||||||| || Sbjct 10325819 GCTTACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCT 10325878 Query 37419 AGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTC 37478 | ||| | ||| |||| || || |||||||| || || ||| || | ||||| Sbjct 10325879 GGCTTCCAAGGCGCCATAGTAAATCGTTTCGAATATCTGCTGATTCAAGAGACCGGCTTC 10325938 Query 37479 TTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGAT 37538 |||||| ||| | | | | || | || || ||||||| || ||||||| ||| || Sbjct 10325939 TTCGCTTTCGTACGGGAAACGCATGAGAATCAAAGCATCAGCGAATCCCTGAATACCAAT 10325998 Query 37539 ACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGAT 37598 || | ||| | || || ||| ||| | | ||| || |||||||| ||||| Sbjct 10325999 GCCCACGGGACGGTGCCTCAAATTGGATTTCCTTGCCTCTGGCAGAGGATAATAGTTGAT 10326058 Query 37599 ATCTATTATTTTATTTAGATTTTT 37622 ||| ||||| || ||||||||||| Sbjct 10326059 ATCAATTATCTTGTTTAGATTTTT 10326082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468513848232800