Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq448 315 9e-81 >seq448 Length=23513712 Score = 315 bits (348), Expect = 9e-81 Identities = 1212/1889 (64%), Gaps = 40/1889 (2%) Strand=Plus/Plus Query 64829 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 64888 ||||| || ||||| ||||||| | | || || || || || |||||||||||||| Sbjct 10325243 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 10325302 Query 64889 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 64948 ||||| ||||| |||| |||||||| || || || || ||| | || Sbjct 10325303 GGTTTTGAGACCAGCTTTCCAGGAATAAAAATGTATGGAGGTCAGCTTTCCATAGTTTGG 10325362 Query 64949 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 65008 || || | ||| || || | || ||||| ||||| ||||| || || | || || || Sbjct 10325363 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 10325422 Query 65009 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 65067 |||||| || | | ||| | |||||||| | || || || | |||| | Sbjct 10325423 CATTTTAATCGTGGACTTGACCGAGATTTCCCACACCGTCTTGTACAGATCGCGCAC--- 10325479 Query 65068 CTTCTGGAAGGTTTGTATTCTGAATG-----GATCCACCATCTGCC----ATAATCCTAT 65118 |||| || ||| || ||| |||| |||| | | ||||| || ||| | Sbjct 10325480 CTTCGGG--GGTATGG--TCTCAATGTTTTGGATCGATCCTCTGCTGGATATGATCTGGT 10325535 Query 65119 TCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAA 65178 |||| || || || | ||| || | |||||||| | | | | ||| | || | Sbjct 10325536 TCTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGA 10325595 Query 65179 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 65238 | || || ||||| || |||| |||| ||| ||||| || || |||| || || || | Sbjct 10325596 CCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTTGTGGTGTAGGGCTCGA 10325655 Query 65239 CAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 65298 || |||||||| |||| || ||||| || ||||| || ||||| || || || | | Sbjct 10325656 AGGATTCATTATTGCCCATTATCTGAGCTGTAGATGCCGTGGGCATGGGAGCAACAAGCA 10325715 Query 65299 AACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGAT 65358 | || | | ||||| | || || || || | | ||| | ||| || | Sbjct 10325716 GAGAGTTCCGGACACCGTGCATCCTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 10325775 Query 65359 CCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCT 65417 || || || ||| | ||| || || || | | | ||| Sbjct 10325776 TCGTTGGCACCTTGTCCCACATGTCGTATTGCAAAATTCCCTTGCTTACCGGGCTGCCCT 10325835 Query 65418 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 65477 | || || |||||||| ||||| ||| || ||||| || || || || || || || Sbjct 10325836 -CGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 10325894 Query 65478 TAATAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATCAAATGG 65536 || ||||| |||||||| |||| || ||| | || | ||||| ||| || | || Sbjct 10325895 TAGTAAATCGTTTCGAATATCTGCTGATTCAAGAGACCG-GCTTCTTCGCTTTCGTACGG 10325953 Query 65537 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 65596 || | |||||| || || || || ||||| |||| |||||| || | || | || Sbjct 10325954 GAAACGCATGAGAATCAAAGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTG 10326013 Query 65597 TCTCTTATTAGAGATTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 65654 ||| ||| || |||| || ||||| | ||||||||| || ||||| || || || Sbjct 10326014 CCTCAAATTGGA--TTTCCTTGCCTCTGGCAGAGGATAATAGTTGATATCAATTATCTTG 10326071 Query 65655 TTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCA 65714 || |||||| || || || ||| || ||||| || || |||||| | || || Sbjct 10326072 TTTAGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTGAAATCATA-CG-TCT 10326129 Query 65715 TCTA-----TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT 65769 ||| ||||||||||||| | |||| || |||| || || || |||| ||||| Sbjct 10326130 TCTCCGGCGTTACAAACATGTTGAGGGCAATGGAGGCCAAGTTGCAGACTGCTATCTCAT 10326189 Query 65770 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 65829 | | | |||| || || || || || | || || |||||||| || || | || Sbjct 10326190 CCGGTGCGGAGTATTCTACGATTTCCGTACACAAGTTGCTGCACTTGATTGTGCCCACAT 10326249 Query 65830 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 65889 | || || || ||||| |||| || || ||||| | || ||| | ||| | || || | Sbjct 10326250 TCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAACAGCATGTACGGATTTCCGGTCT 10326309 Query 65890 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC 65949 | | || | || || || || ||| | | | ||||||| | | ||| | Sbjct 10326310 CCACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTG--GC 10326367 Query 65950 TCTTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 66007 | ||||| |||||| |||| |||||| || || ||||| || | || Sbjct 10326368 CCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACGTCGTG 10326427 Query 66008 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 66067 | |||||||| | | || ||||| | |||||| || |||| ||| ||| ||||| Sbjct 10326428 GAGACCAGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTT 10326487 Query 66068 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTT 66127 ||| |||||||| || ||||| || || ||| | ||| | | | || || || || Sbjct 10326488 CATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTT 10326547 Query 66128 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTA 66187 ||||| ||||| || || || |||||| | | | ||| | ||||| ||||||| ||| Sbjct 10326548 GCCTGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGGTA 10326607 Query 66188 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 66247 ||||| | | || || || ||| ||||||||||| | || | || ||||| Sbjct 10326608 AATGGCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATT 10326667 Query 66248 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 66307 |||| |||| |||||||| | ||||| || || ||||| || ||| | || | | Sbjct 10326668 GAAAACCCTCAGCATTGGAACCAACCCATTCGAAGTTCCATTTGTGCCGCAAATCGATGT 10326727 Query 66308 TCCACTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 66365 || |||||||||| | | || | | || || || || || || || ||||| Sbjct 10326728 GCCCTTTGCACGAATGCAGT-GTACGTTA-AGTCCAATGCCACCGGCGGACTTGGAGATC 10326785 Query 66366 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 66425 | ||||| | | | | | | |||||||| || || | ||||| | || Sbjct 10326786 ATGGCGCACTGCTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGA 10326845 Query 66426 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 66485 || ||||| |||| || | || | || | || ||| | || || || || Sbjct 10326846 AGGAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCA 10326905 Query 66486 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 66545 ||||| || | || || || ||||| || || || | || | || |||||| | Sbjct 10326906 TGCGTGAAGTAGCGCTCCGATAGAAGATTATAAGTTTCCACGGCCGCATCGATATCCTCT 10326965 Query 66546 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 66605 ||| ||||| | || || ||||| | ||| ||||| |||| || ||||||| | Sbjct 10326966 CCATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCG 10327025 Query 66606 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 66665 ||| |||| | || ||||| |||| || || || ||||||||||| || |||| Sbjct 10327026 TTTCTTTTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATAGCCAAAG 10327085 Query 66666 TCTCGTTCGTAAATAATAACCGAGTTGAG 66694 || || || || || || |||||| || Sbjct 10327086 TCACGATCATAGATTATGGACGAGTTCAG 10327114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658157415210800