Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq448 217 1e-51 >seq448 Length=23513712 Score = 217 bits (240), Expect = 1e-51 Identities = 481/716 (67%), Gaps = 18/716 (3%) Strand=Plus/Plus Query 20881 TCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGT 20940 ||||| ||||| || ||||| || | | ||| || | ||| || || ||||||| Sbjct 2968709 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGT 2968768 Query 20941 TGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGA 21000 | ||| ||||| | ||| |||| |||||| |||||||| ||||| |||| ||||| | Sbjct 2968769 TCAGGTAGACGTGTGTGTCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCA 2968828 Query 21001 CGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGC 21060 | || || |||| | || || ||||| ||| ||||||||| || || || || |||| Sbjct 2968829 CATGGGCAATCATGTGGGTGAGCAGGGCATAGGAGGCGATGTTGAAGGGTACGCCCAGGC 2968888 Query 21061 CCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCG------AGCCACGT 21114 ||||||| ||| |||||||| |||||||| || ||||| || || | |||| Sbjct 2968889 CCATGTCTGCGCTTCTCTGGTATAGCTGGCACGAAAGCTCACCGCGCTTCTCGGAGACGT 2968948 Query 21115 AAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCC 21174 ||||||| ||| ||| || || || || |||||| | || |||| || |||| Sbjct 2968949 AAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGTGGATTCC 2969008 Query 21175 ACGCGCACATAACGATGCGCCGATC-GTGGGG--CCGCCTGTTAATTAGATCCACCACGT 21231 | || |||| | |||||| || || | |||| |||| || || | ||| | Sbjct 2969009 AAGCCGACATGATGATGCGACGGTCTGAGGGGTTATTCCTG---ATGGTGTCGATCACCT 2969065 Query 21232 AACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCC 21291 ||||||||||| | ||||| || ||||| | ||||| | ||||| ||||| Sbjct 2969066 GGCGCAGCTGGTCGATCCCCTTGCCGCTGTAGTCGTCGTCGCAGGTGCCGTACTGCGCCC 2969125 Query 21292 CAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGA 21351 | ||||| ||||| ||||| |||||||||||||||||||| || || || || || Sbjct 2969126 CGAAATGCCTCCATTGGAAGCCGTACACCGGCCCCAGATCCCCAACGGCTCGCCCCGTGA 2969185 Query 21352 AGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTAC--GCCGCG 21409 | ||| | ||| ||| | | ||| | || | | ||||| || | || | || Sbjct 2969186 ACCCCATCTTGTCCAGAAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCG 2969245 Query 21410 GC-GCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGA 21468 | || ||| | ||| ||| || |||| | |||||||||| |||||| | | Sbjct 2969246 CCTGCAGCAGCT---TGGCGTCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCCA 2969302 Query 21469 CGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTTATATC 21528 | | | | || || | || ||||| | || |||||| || || | || | | Sbjct 2969303 CCGCGCGGAAGAAGACGCGCTTCGTGGTCAGCAAAGGAAAGGAGTTCCGCATGTCGAAGC 2969362 Query 21529 GGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTCTGC 21584 | |||| |||||||||||| |||||||| |||| | |||| || |||| Sbjct 2969363 GCATCTGACTGCCGAACACGGACAGAGTGCCCACCTCCGTGCGGTCCATCCGCTGC 2969418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427766250717600