Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq448 150 2e-31 >seq448 Length=23513712 Score = 150 bits (166), Expect = 2e-31 Identities = 677/1060 (64%), Gaps = 32/1060 (3%) Strand=Plus/Plus Query 153345 GCCAGTTTCAAACTGGCATCGAGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTC 153404 ||||||| | ||||| || | ||| ||| || | |||||| | ||||| | ||| Sbjct 10325865 GCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCGAATATCTGCTGATTC 10325924 Query 153405 AGTAAAACGGCAGCATCGCTCACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAA 153464 | | | |||| | ||||| ||||||| | |||| | | || ||||| || || Sbjct 10325925 AAGAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAAGCATCAGCGAAT 10325984 Query 153465 CCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACA 153524 || ||||| |||||||| | |||||| || | || ||| ||||| |||| || | | Sbjct 10325985 CCCTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGATTTCCTTGCCTCTGGCAGA 10326044 Query 153525 GGATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACGAC-ATGTT--TCACCACA 153581 ||||| | ||| || || || || |||| | | | || || || | || | Sbjct 10326045 GGATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACTTCC 10326104 Query 153582 GAATGCAACAGTTGAAAATCAAACGT--TC-CATTAATGATATATTTGTTGACGGCAATC 153638 || | |||||| ||| |||| || | | | | | |||||| |||||| Sbjct 10326105 TTGAGCTTC--TTGAAA-TCATACGTCTTCTCCGGCGTTACAAACATGTTGAGGGCAATG 10326161 Query 153639 GACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACAC 153698 || ||||||||||| || || | || || || ||| | |||| ||| ||||||| |||| Sbjct 10326162 GAGGCCAAGTTGCAGACTGCTATCTCATCCGGTGCGGAGTATTCTACGATTTCCGTACAC 10326221 Query 153699 AAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCC 153758 || |||||||| || || ||| ||| || ||||| || | ||| ||||||||| Sbjct 10326222 AAGTTGCTGCACTTGATTGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 10326281 Query 153759 TTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAATAGTACGCATCAAT 153818 ||| | |||||||| || | ||||| || |||| || || || | | | || Sbjct 10326282 TTGAACAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGG 10326341 Query 153819 G--TGA-CCGCGGGCATTTGATCGCGAAACTGGCCCTTGTCTTCGTAGTGTTTGTACCAG 153875 | ||| || | || | | | | | |||| | ||||| | | |||| Sbjct 10326342 GATTGAGCCTTAACCGTTCGGTTG---GCCCGACCCTCTTGCTCGTATTTCTCGTACAGC 10326398 Query 153876 TATTCAAACTCATCACCAAACGTATTGTTAAGCTCGGGACATTCGTTGGGACACATCAGT 153935 | ||| || ||||| || || | || || | ||||| | || ||| ||||| || Sbjct 10326399 TTTTCGAATTCATCGCCCCACACGTCGTGGAGACCAGGACACTTGTGGGGGCACATGAGC 10326458 Query 153936 GACCATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGAACCCATAGGGCGTTC 153995 ||||| || || | | ||||| ||| || | |||||| | ||| ||||||| Sbjct 10326459 GACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAA 10326518 Query 153996 ATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAGACGTCC 154055 | ||| ||||| || | ||||| |||| |||| || | | || || Sbjct 10326519 AACAGATCGCGTGCGCGATTCTCTTCTTTGCCTGTGTTCTTCTTCAGTTCCAGGAACTCA 10326578 Query 154056 ATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCGCCTTTACGCTTGCCG--- 154112 | | || | ||||| ||||||| ||||| || || || |||||||||| Sbjct 10326579 AAGACATCCGAGTGCCAGGGTTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCT 10326638 Query 154113 CCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGGGTAGCAGACCGCTG 154172 ||||||| || | ||| ||| ||| |||||||||| ||||| || | || || | Sbjct 10326639 CCCTGATCCACATAACGTGCCACATTATTGAAAACCCTCAGCATTGGAACCAACCCATTC 10326698 Query 154173 GCGGTACCGTTTGTAGATTTAATCTTGCTGTTGCGGCCT-----CGAACGCTGTTTACGT 154227 | || || ||||| |||| | || | ||| |||| || || ||||| Sbjct 10326699 GAAGTTCCATTTGTGCCGCAAATC-----GATGTGCCCTTTGCACGAATGCAGTGTACGT 10326753 Query 154228 TTAATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGCAATCGTTCAATGTGTTATAGA 154287 | | |||||| || ||| || ||||||||||||||||| | | || | || | | Sbjct 10326754 TAAGTCCAATGCCACCGGCGGACTTGGAGATCATGGCGCACTGCTCCACAGACTTGAAAA 10326813 Query 154288 TACCACGAATGCTATCGCTTTCCATGGTCAATAGGAAACATGAACTCATCTGCGG--AGT 154345 | || ||| ||| | |||||||| |||||||| || || |||||| || Sbjct 10326814 TGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACACGACGACAACTGCGGCCGGT 10326873 Query 154346 TGGAGTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGTG 154385 | ||| | || ||||||| || || ||| |||||| Sbjct 10326874 T--TGTGGCAGCGGCAAACAGTGTGGGCGATGCATGCGTG 10326911 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || ||||||||||| || | |||| ||||| Sbjct 10409939 ACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCC 10409880 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || ||||| |||||||||| |||||||| ||||| || ||||||||||| || Sbjct 10409879 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTC-CTG 10409821 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||| | | ||| | || || | || || ||||||| || | ||||| Sbjct 10409820 AATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 10409761 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | || || ||||| || ||||| Sbjct 10409760 GCCCGTGAGGGTCTTAACGAAGATCTGCAT 10409731 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || |||||||| || ||| || |||| || || Sbjct 4228233 ACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 4228174 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || || |||||||||| |||||||| || || ||||| || || || | Sbjct 4228173 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTGG 4228114 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | ||||| | ||||||||||| | ||| | |||||| Sbjct 4228113 ATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTTG 4228054 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | ||||| ||||| || |||||| Sbjct 4228053 CCGGTGAGGGTTTTCACGAAGATCTGCATA 4228024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496052404504000