Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq448 343 2e-89 seq449 187 4e-42 >seq448 Length=23513712 Score = 343 bits (380), Expect = 2e-89 Identities = 1222/1891 (65%), Gaps = 44/1891 (2%) Strand=Plus/Plus Query 78708 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 78767 ||||| || ||||| ||||||| | | || || || || || |||||||||||||| Sbjct 10325243 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 10325302 Query 78768 CGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGG 78827 ||||| ||||| |||| || ||||| || || || || ||| | || Sbjct 10325303 GGTTTTGAGACCAGCTTTCCAGGAATAAAAATGTATGGAGGTCAGCTTTCCATAGTTTGG 10325362 Query 78828 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 78887 || || | ||| || || | || ||||| ||||| ||||| || || | || || || Sbjct 10325363 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 10325422 Query 78888 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 78946 |||||| || | | ||| | |||||||| | || || || | |||| | Sbjct 10325423 CATTTTAATCGTGGACTTGACCGAGATTTCCCACACCGTCTTGTACAGATCGCGCAC--- 10325479 Query 78947 CTTCTGGAAGGTTTGTATTCTGAATG-----GATCCACCATCTGCC----ATAATCCTAT 78997 |||| || ||| || ||| |||| |||| | | ||||| || ||| | Sbjct 10325480 CTTCGGG--GGTATGG--TCTCAATGTTTTGGATCGATCCTCTGCTGGATATGATCTGGT 10325535 Query 78998 TCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAA 79057 |||| || || || | ||| || | |||||||| | | | | ||| | || | Sbjct 10325536 TCTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGA 10325595 Query 79058 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCA 79117 | || || ||||| || |||| |||| ||| ||||| || || |||| || || || | Sbjct 10325596 CCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTTGTGGTGTAGGGCTCGA 10325655 Query 79118 CCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATA 79177 ||||||||||| |||| || ||||| || |||||||| ||||| || || || | | Sbjct 10325656 AGGATTCATTATTGCCCATTATCTGAGCTGTAGATGCCGTGGGCATGGGAGCAACAAGCA 10325715 Query 79178 AACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGAT 79237 | || | | ||||| || || || || | | ||| ||||| || | Sbjct 10325716 GAGAGTTCCGGACACCGTGCATCCTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 10325775 Query 79238 CAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACT-AGCGTATGATCCT 79296 | || || | ||| | || ||||| | ||| || || || | || ||| Sbjct 10325776 TCGTTGGCACCTTGTCCCACATGTCGTATTGCAAAATTCCCTTGCTTACCGGGCTGCCCT 10325835 Query 79297 GTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCG 79356 ||| ||||| || || ||||| | | ||| | ||| || || || || || || || Sbjct 10325836 C-GTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 10325894 Query 79357 TAATAAATGGTTTCGAAAATCTTCTTATT---GAGATCTTGTGCTTCTAGGCTATCAAAT 79413 || ||||| |||||||| |||| || ||| |||| | |||||| ||| || | Sbjct 10325895 TAGTAAATCGTTTCGAATATCTGCTGATTCAAGAGACCG---GCTTCTTCGCTTTCGTAC 10325951 Query 79414 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 79473 || || | |||||| || || || || ||||| |||| |||||| || | || | Sbjct 10325952 GGGAAACGCATGAGAATCAAAGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGG 10326011 Query 79474 TGTCTCTTATTAGAAATTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATTT 79531 || ||| ||| || |||| || ||||| | ||||||||| || ||||| || || | Sbjct 10326012 TGCCTCAAATTGGA--TTTCCTTGCCTCTGGCAGAGGATAATAGTTGATATCAATTATCT 10326069 Query 79532 TATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTC 79591 | || ||||| || | || ||| || ||||| || || |||||| | |||| Sbjct 10326070 TGTTTAGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTGAAATCATA-CGTC 10326128 Query 79592 CATCTA-----TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTC 79646 ||| ||||||||||||| | || | || |||| || || || |||| ||| Sbjct 10326129 T-TCTCCGGCGTTACAAACATGTTGAGGGCAATGGAGGCCAAGTTGCAGACTGCTATCTC 10326187 Query 79647 ATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAA 79706 || | | | |||| || ||||| || || | ||| || ||||| || || || | Sbjct 10326188 ATCCGGTGCGGAGTATTCTACGATTTCCGTACACAAGTTGCTGCACTTGATTGTGCCCAC 10326247 Query 79707 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGT 79766 ||| || || || ||||| |||| || || ||||| | || ||| ||||| | || || Sbjct 10326248 ATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAACAGCATGTACGGATTTCCGGT 10326307 Query 79767 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTA 79826 || | || | || || || || ||| | | | ||||||| | | ||| Sbjct 10326308 CTCCACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGG- 10326366 Query 79827 TCTCTTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCG 79884 | | ||||| ||||||| || | |||||| || || ||||| || ||| Sbjct 10326367 -CCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACGTCG 10326425 Query 79885 TCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGT 79944 | | |||||||| | || || ||||| | |||||| || || | ||| || ||| Sbjct 10326426 TGGAGACCAGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGT 10326485 Query 79945 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCG 80004 ||||| |||||||| || ||||| || || ||| ||||| | | | || ||| || Sbjct 10326486 TTCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCT 10326545 Query 80005 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 80064 || ||||| ||||| || || || |||||| | | | ||| || ||||| ||||||| | Sbjct 10326546 TTGCCTGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGG 10326605 Query 80065 TATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 80124 || ||||| | | || || || ||| ||||||||||| | || | || ||| Sbjct 10326606 TAAATGGCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTA 10326665 Query 80125 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 80184 || |||| |||| |||||||| | ||||| || || ||||| || ||| | || | Sbjct 10326666 TTGAAAACCCTCAGCATTGGAACCAACCCATTCGAAGTTCCATTTGTGCCGCAAATCGAT 10326725 Query 80185 CTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 80242 | || | |||||||| | | || | | || || || || || || || |||| Sbjct 10326726 GTGCCCTTTGCACGAATGCAGT-GTACGTTA-AGTCCAATGCCACCGGCGGACTTGGAGA 10326783 Query 80243 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAA 80302 | | ||||| | | | | | | |||||||| ||| || | ||||| | | Sbjct 10326784 TCATGGCGCACTGCTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCA 10326843 Query 80303 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 80362 | || ||||| |||| || | || | || | || ||| | || || || | Sbjct 10326844 GAAGGAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATG 10326903 Query 80363 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCC 80422 | ||||| || | || || || ||||| || || || | || | || |||||| Sbjct 10326904 CATGCGTGAAGTAGCGCTCCGATAGAAGATTATAAGTTTCCACGGCCGCATCGATATCCT 10326963 Query 80423 ATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 80482 | ||| ||||| | ||| || ||||| | ||| ||||| |||| || ||||||| Sbjct 10326964 CTCCATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTC 10327023 Query 80483 TATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 80542 ||| |||| | || || || |||| || || || ||||||||||| || || Sbjct 10327024 CGTTTCTTTTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATAGCCAA 10327083 Query 80543 AGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 |||| || || || || || |||||| || Sbjct 10327084 AGTCACGATCATAGATTATGGACGAGTTCAG 10327114 >seq449 Length=25286936 Score = 187 bits (206), Expect = 4e-42 Identities = 550/841 (65%), Gaps = 15/841 (2%) Strand=Plus/Plus Query 49660 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 49719 |||||||| ||||| || ||||| || || ||||| || || ||||| |||| Sbjct 11983478 ACTCCCATGCGCTGGTACTCCCCCACCTTCTTCTCAAAAAAGTTGGTCTTTCCATCCAGC 11983537 Query 49720 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 49779 ||||| | |||||||| | ||| || || | || || || ||| || ||||| Sbjct 11983538 GATATCATCTCCATGAAGTTAAAGGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAAC 11983597 Query 49780 TCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 49839 || | ||| | ||||| || || || || || ||||| || |||||||| Sbjct 11983598 TCCACGAGCAAACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATG 11983657 Query 49840 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 49899 || || | || || || || || | ||||| || || || ||||||| ||||| || Sbjct 11983658 CCAATCAAATTGACGGGCAGGGCATCGGTAAGGAACTCCTGCTCAATGGCCACCGCGTCG 11983717 Query 49900 GTTATAATAGATCTAACGGTTTCT-TCACTC---GGTGGATGCAATAAATGTTTAAACAT 49955 || ||||| | | | || | | ||| | |||| | |||| ||||| Sbjct 11983718 CGGAT----GATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACCAGGTGTTGGAACAT 11983773 Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 || || || |||||||||| |||||||| | | || || |||||||| || || Sbjct 11983774 CAGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGT 11983833 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA--TGACCCAGAA 50073 | ||| ||||| || || ||||| |||||||| || ||||| || || || | | ||| Sbjct 11983834 CAATCCAGGCATCAGACCTCGCTTCTTAAGCCAGAAAATGGAAGCGAAGCTGCCGCTGAA 11983893 Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-CGCTGTC 50132 |||||| || || || ||||||||||| | | | || || | ||| || | | Sbjct 11983894 --GAAGATGCCCTCCACGGCGGCAAAGGCGATGATGCGTTCCCCGAAGTTGGCCGATTTG 11983951 Query 50133 ATG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 | ||||| | ||||| || ||||| || ||| ||||||||||| || Sbjct 11983952 GAGGAGATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATA 11984011 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || ||||| || || | | | | ||| | ||||| |||||||||| ||| Sbjct 11984012 GCGTTAAACAGGTACTCTCGCTGGTGTGGATCACGGATGTAAGTGTCGATCAAAACACTG 11984071 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||| ||||| || | ||| || ||||| |||||||| |||||||| || | ||||| Sbjct 11984072 TACATCTCCGAGTGCACGTTCTCCATGGCGATCTGAAAGCCGTAGAAGCAACGTGCCTCC 11984131 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 || |||||||| || || || || || | | || || || || || ||||| | Sbjct 11984132 GTGATCTGCACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCGTCGGAG 11984191 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 || || || || || | || || || ||||| |||| | | || | | Sbjct 11984192 GCGGCGAAGAAGGCAAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGC 11984251 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 |||||| | | || || || | ||| || || || || ||||| || || ||||| ||| Sbjct 11984252 CAATCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACAGTCCAGAAAGAAGCCTCAGCC 11984311 Query 50491 T 50491 | Sbjct 11984312 T 11984312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718252010466800